PDB Short entry for 5Y70 HEADER MEMBRANE PROTEIN 16-AUG-17 5Y70 TITLE NMR STRUCTURE OF KMP11 IN DPC MICELLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINETOPLASTID MEMBRANE PROTEIN 11; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KMP-11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 GENE: KMP-11/1, KMP-11/2, KMP-11/3, KMP-11/4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS DPC MICELLE, KINETOPLASTID MEMBRANE PROTEIN-11, TRYPANOSOMES, KEYWDS 2 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.LU,L.Z.LIM,J.SONG REVDAT 2 14-JUN-23 5Y70 1 REMARK REVDAT 1 07-FEB-18 5Y70 0 JRNL AUTH L.Z.LIM,S.EE,J.FU,Y.TAN,C.Y.HE,J.SONG JRNL TITL KINETOPLASTID MEMBRANE PROTEIN-11 ADOPTS A FOUR-HELIX BUNDLE JRNL TITL 2 FOLD IN DPC MICELLE. JRNL REF FEBS LETT. V. 591 3793 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 29082514 JRNL DOI 10.1002/1873-3468.12891 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 10 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004782. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 500 UM [U-99% 13C; U-99% 15N] REMARK 210 KMP-11, 150 MM DPC, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D CBCA(CO)NH; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR 2.4.1, CYANA 2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 93 REMARK 465 SER A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 17 -63.43 -97.71 REMARK 500 1 LYS A 34 158.13 -49.98 REMARK 500 1 GLU A 37 -59.28 75.70 REMARK 500 1 PRO A 42 9.20 -69.82 REMARK 500 1 HIS A 58 -32.41 176.05 REMARK 500 1 PHE A 89 70.32 -169.50 REMARK 500 2 ALA A 17 -63.53 -98.82 REMARK 500 2 PRO A 35 76.99 -69.73 REMARK 500 2 ASP A 36 -51.75 -124.42 REMARK 500 2 THR A 39 42.98 38.01 REMARK 500 2 PRO A 42 8.73 -69.74 REMARK 500 2 HIS A 58 29.12 168.21 REMARK 500 2 PHE A 89 72.48 -114.51 REMARK 500 3 ALA A 17 -63.70 -99.29 REMARK 500 3 LYS A 34 162.46 -49.68 REMARK 500 3 GLU A 37 -58.27 75.91 REMARK 500 3 PRO A 42 9.54 -69.73 REMARK 500 3 HIS A 58 -32.70 177.41 REMARK 500 3 PHE A 89 69.09 -119.70 REMARK 500 4 ALA A 17 -61.54 -100.41 REMARK 500 4 GLU A 37 -58.35 75.87 REMARK 500 4 THR A 39 40.46 39.43 REMARK 500 4 PRO A 42 8.50 -69.73 REMARK 500 4 HIS A 58 -34.59 175.40 REMARK 500 5 ALA A 17 -65.10 -99.62 REMARK 500 5 LYS A 34 157.50 -49.59 REMARK 500 5 PRO A 35 80.55 -69.73 REMARK 500 5 THR A 39 66.99 35.97 REMARK 500 5 PRO A 42 9.75 -69.73 REMARK 500 5 HIS A 58 42.21 171.23 REMARK 500 6 ALA A 17 -63.45 -98.40 REMARK 500 6 LYS A 34 108.47 -49.85 REMARK 500 6 PRO A 35 98.54 -69.74 REMARK 500 6 ASP A 36 -51.95 -125.19 REMARK 500 6 PRO A 42 8.11 -69.75 REMARK 500 6 HIS A 58 -34.90 176.34 REMARK 500 6 GLN A 88 -64.05 73.15 REMARK 500 6 PHE A 89 -61.12 179.73 REMARK 500 6 PRO A 90 80.95 -69.79 REMARK 500 7 ALA A 17 -61.90 -96.92 REMARK 500 7 LYS A 34 106.74 -48.74 REMARK 500 7 PRO A 35 -86.80 -69.81 REMARK 500 7 GLU A 37 -57.96 76.84 REMARK 500 7 THR A 39 -5.13 78.64 REMARK 500 7 LEU A 40 -165.12 -178.19 REMARK 500 7 PRO A 42 8.38 -69.79 REMARK 500 7 HIS A 58 -33.14 177.07 REMARK 500 7 PHE A 89 71.46 58.05 REMARK 500 8 ALA A 17 -64.91 -98.80 REMARK 500 8 GLU A 18 -61.06 -90.33 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36112 RELATED DB: BMRB REMARK 900 NMR STRUCTURE OF KMP-11 IN DPC MICELLE DBREF 5Y70 A 1 92 UNP P69300 KM11_TRYBB 1 92 SEQADV 5Y70 GLY A 93 UNP P69300 EXPRESSION TAG SEQADV 5Y70 SER A 94 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 95 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 96 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 97 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 98 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 99 UNP P69300 EXPRESSION TAG SEQADV 5Y70 HIS A 100 UNP P69300 EXPRESSION TAG SEQRES 1 A 100 MET ALA THR THR TYR GLU GLU PHE ALA ALA LYS LEU ASP SEQRES 2 A 100 ARG LEU ASP ALA GLU PHE ALA LYS LYS MET GLU GLU GLN SEQRES 3 A 100 ASN LYS ARG PHE PHE ALA ASP LYS PRO ASP GLU ALA THR SEQRES 4 A 100 LEU SER PRO GLU MET LYS GLU HIS TYR GLU LYS PHE GLU SEQRES 5 A 100 LYS MET ILE GLN GLU HIS THR ASP LYS PHE ASN LYS LYS SEQRES 6 A 100 MET ARG GLU HIS SER GLU HIS PHE LYS ALA LYS PHE ALA SEQRES 7 A 100 GLU LEU LEU GLU GLN GLN LYS ASN ALA GLN PHE PRO GLY SEQRES 8 A 100 LYS GLY SER HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ALA A 2 ASP A 13 1 12 HELIX 2 AA2 ALA A 17 GLU A 24 1 8 HELIX 3 AA3 ASN A 27 ALA A 32 1 6 HELIX 4 AA4 PRO A 42 TYR A 48 1 7 HELIX 5 AA5 TYR A 48 GLN A 56 1 9 HELIX 6 AA6 HIS A 58 MET A 66 1 9 HELIX 7 AA7 HIS A 69 GLN A 88 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000