PDB Short entry for 6ABP HEADER BINDING PROTEINS 25-APR-91 6ABP TITLE SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES OF AN ARABINOSE-BINDING TITLE 2 PROTEIN MUTANT (MET108LEU) WHICH EXHIBITS ENHANCED AFFINITY AND TITLE 3 ALTERED SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ARABINOSE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS BINDING PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR P.S.VERMERSCH,J.J.G.TESMER,F.A.QUIOCHO REVDAT 6 13-MAR-24 6ABP 1 HETSYN REVDAT 5 29-JUL-20 6ABP 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 24-FEB-09 6ABP 1 VERSN REVDAT 3 17-MAY-05 6ABP 1 REMARK REVDAT 2 31-OCT-93 6ABP 2 CONECT REVDAT 1 31-OCT-91 6ABP 0 JRNL AUTH P.S.VERMERSCH,D.D.LEMON,J.J.TESMER,F.A.QUIOCHO JRNL TITL SUGAR-BINDING AND CRYSTALLOGRAPHIC STUDIES OF AN JRNL TITL 2 ARABINOSE-BINDING PROTEIN MUTANT (MET108LEU) THAT EXHIBITS JRNL TITL 3 ENHANCED AFFINITY AND ALTERED SPECIFICITY. JRNL REF BIOCHEMISTRY V. 30 6861 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 2069949 JRNL DOI 10.1021/BI00242A009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.A.QUIOCHO,D.K.WILSON,N.K.VYAS REMARK 1 TITL SUBSTRATE SPECIFICITY AND AFFINITY OF A PROTEIN MODULATED BY REMARK 1 TITL 2 BOUND WATER MOLECULES REMARK 1 REF NATURE V. 340 404 1989 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.A.QUIOCHO,N.K.VYAS REMARK 1 TITL NOVEL STEREOSPECIFICITY OF THE L-ARABINOSE-BINDING PROTEIN REMARK 1 REF NATURE V. 310 381 1984 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH B.MAO,M.R.PEAR,J.A.MCCAMMON,F.A.QUIOCHO REMARK 1 TITL HINGE-BENDING IN L-ARABINOSE-BINDING PROTEIN. THE REMARK 1 TITL 2 "VENUS'S-FLYTRAP" MODEL REMARK 1 REF J.BIOL.CHEM. V. 257 1131 1982 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 4 REMARK 1 AUTH G.L.GILLILAND,F.A.QUIOCHO REMARK 1 TITL STRUCTURE OF THE L-ARABINOSE-BINDING PROTEIN FROM REMARK 1 TITL 2 ESCHERICHIA COLI AT 2.4 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 146 341 1981 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.E.NEWCOMER,G.L.GILLIAND,F.A.QUIOCHO REMARK 1 TITL L-ARABINOSE-BINDING PROTEIN-SUGAR COMPLEX AT 2.4 ANGSTROMS REMARK 1 TITL 2 RESOLUTION. STEREOCHEMISTRY AND EVIDENCE FOR A STRUCTURAL REMARK 1 TITL 3 CHANGE REMARK 1 REF J.BIOL.CHEM. V. 256 13213 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.E.NEWCOMER,B.A.LEWIS,F.A.QUIOCHO REMARK 1 TITL THE RADIUS OF GYRATION OF L-ARABINOSE-BINDING PROTEIN REMARK 1 TITL 2 DECREASES UPON BINDING OF LIGAND REMARK 1 REF J.BIOL.CHEM. V. 256 13218 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 7 REMARK 1 AUTH D.M.MILLER /III,M.E.NEWCOMER,F.A.QUIOCHO REMARK 1 TITL THE THIOL GROUP OF THE L-ARABINOSE-BINDING PROTEIN. REMARK 1 TITL 2 CHROMOPHORIC LABELING AND CHEMICAL IDENTIFICATION OF THE REMARK 1 TITL 3 SUGAR-BINDING SITE REMARK 1 REF J.BIOL.CHEM. V. 254 7521 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.E.NEWCOMER,D.M.MILLER /III,F.A.QUIOCHO REMARK 1 TITL LOCATION OF THE SUGAR-BINDING SITE OF L-ARABINOSE-BINDING REMARK 1 TITL 2 PROTEIN. SUGAR DERIVATIVE SYNTHESES, SUGAR BINDING REMARK 1 TITL 3 SPECIFICITY, AND DIFFERENCE FOURIER ANALYSES REMARK 1 REF J.BIOL.CHEM. V. 254 7529 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 9 REMARK 1 AUTH F.A.QUIOCHO,G.L.GILLILAND,G.N.PHILLIPS JR. REMARK 1 TITL THE 2.8-ANGSTROMS RESOLUTION STRUCTURE OF THE REMARK 1 TITL 2 L-ARABINOSE-BINDING PROTEIN FROM ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 252 5142 1977 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 10 REMARK 1 AUTH G.N.PHILLIPS JR.,V.K.MAHAJAN,A.K.Q.SIU,F.A.QUIOCHO REMARK 1 TITL STRUCTURE OF L-ARABINOSE-BINDING PROTEIN FROM ESCHERICHIA REMARK 1 TITL 2 COLI AT 5 ANGSTROMS RESOLUTION AND PRELIMINARY RESULTS AT REMARK 1 TITL 3 3.5 ANGSTROMS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 73 2186 1976 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.024 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.044 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ABP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.01000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.06000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.01000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.06000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CB CG OD1 ND2 REMARK 470 LYS A 306 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 295 O LYS A 306 1.96 REMARK 500 OE1 GLU A 115 O HOH A 434 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 13 CD GLU A 13 OE1 -0.067 REMARK 500 ARG A 151 CZ ARG A 151 NH2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 23 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 79 CA - CB - CG ANGL. DEV. = 22.2 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLU A 115 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 116 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 TYR A 122 CB - CG - CD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LYS A 123 CA - CB - CG ANGL. DEV. = 24.3 DEGREES REMARK 500 GLU A 144 CG - CD - OE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 146 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 149 NH1 - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 150 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 151 NH1 - CZ - NH2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 TYR A 170 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 PRO A 180 N - CD - CG ANGL. DEV. = -9.3 DEGREES REMARK 500 HIS A 193 CA - CB - CG ANGL. DEV. = -11.0 DEGREES REMARK 500 PHE A 221 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR A 261 CG - CD2 - CE2 ANGL. DEV. = -6.3 DEGREES REMARK 500 LEU A 267 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 292 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 GLU A 296 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU A 299 CG - CD - OE1 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 -55.26 58.87 REMARK 500 ASN A 232 -37.64 136.26 REMARK 500 PRO A 254 -152.19 -80.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 128 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6ABP A 1 306 UNP P02924 ARAF_ECOLI 24 329 SEQADV 6ABP LEU A 108 UNP P02924 MET 131 CONFLICT SEQRES 1 A 306 GLU ASN LEU LYS LEU GLY PHE LEU VAL LYS GLN PRO GLU SEQRES 2 A 306 GLU PRO TRP PHE GLN THR GLU TRP LYS PHE ALA ASP LYS SEQRES 3 A 306 ALA GLY LYS ASP LEU GLY PHE GLU VAL ILE LYS ILE ALA SEQRES 4 A 306 VAL PRO ASP GLY GLU LYS THR LEU ASN ALA ILE ASP SER SEQRES 5 A 306 LEU ALA ALA SER GLY ALA LYS GLY PHE VAL ILE CYS THR SEQRES 6 A 306 PRO ASP PRO LYS LEU GLY SER ALA ILE VAL ALA LYS ALA SEQRES 7 A 306 ARG GLY TYR ASP MET LYS VAL ILE ALA VAL ASP ASP GLN SEQRES 8 A 306 PHE VAL ASN ALA LYS GLY LYS PRO MET ASP THR VAL PRO SEQRES 9 A 306 LEU VAL MET LEU ALA ALA THR LYS ILE GLY GLU ARG GLN SEQRES 10 A 306 GLY GLN GLU LEU TYR LYS GLU MET GLN LYS ARG GLY TRP SEQRES 11 A 306 ASP VAL LYS GLU SER ALA VAL MET ALA ILE THR ALA ASN SEQRES 12 A 306 GLU LEU ASP THR ALA ARG ARG ARG THR THR GLY SER MET SEQRES 13 A 306 ASP ALA LEU LYS ALA ALA GLY PHE PRO GLU LYS GLN ILE SEQRES 14 A 306 TYR GLN VAL PRO THR LYS SER ASN ASP ILE PRO GLY ALA SEQRES 15 A 306 PHE ASP ALA ALA ASN SER MET LEU VAL GLN HIS PRO GLU SEQRES 16 A 306 VAL LYS HIS TRP LEU ILE VAL GLY MET ASN ASP SER THR SEQRES 17 A 306 VAL LEU GLY GLY VAL ARG ALA THR GLU GLY GLN GLY PHE SEQRES 18 A 306 LYS ALA ALA ASP ILE ILE GLY ILE GLY ILE ASN GLY VAL SEQRES 19 A 306 ASP ALA VAL SER GLU LEU SER LYS ALA GLN ALA THR GLY SEQRES 20 A 306 PHE TYR GLY SER LEU LEU PRO SER PRO ASP VAL HIS GLY SEQRES 21 A 306 TYR LYS SER SER GLU MET LEU TYR ASN TRP VAL ALA LYS SEQRES 22 A 306 ASP VAL GLU PRO PRO LYS PHE THR GLU VAL THR ASP VAL SEQRES 23 A 306 VAL LEU ILE THR ARG ASP ASN PHE LYS GLU GLU LEU GLU SEQRES 24 A 306 LYS LYS GLY LEU GLY GLY LYS HET ARA A 307 10 HET ARB A 308 10 HETNAM ARA ALPHA-L-ARABINOPYRANOSE HETNAM ARB BETA-L-ARABINOPYRANOSE HETSYN ARA ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN ARB BETA-L-ARABINOSE; L-ARABINOSE; ARABINOSE FORMUL 2 ARA C5 H10 O5 FORMUL 3 ARB C5 H10 O5 FORMUL 4 HOH *205(H2 O) HELIX 1 H01 TRP A 16 ASP A 30 1 15 HELIX 2 H02 ASP A 42 GLY A 57 1 16 HELIX 3 H03 LEU A 70 TYR A 81 1 12 HELIX 4 H04 ALA A 109 GLY A 129 1 21 HELIX 5 H05 ASP A 146 ALA A 161 1 16 HELIX 6 H06 ASN A 177 GLN A 192 1 16 HELIX 7 H07 ASP A 206 GLY A 218 1 13 HELIX 8 H08 GLY A 233 SER A 241 1HAS SEGMENTS OF 3/10 HELIX 9 HELIX 9 H09 ASP A 257 LYS A 273 1 17 HELIX 10 H10 ASN A 293 LYS A 301 1HAS SEGMENTS OF 3/10 HELIX 9 SHEET 1 S1 6 GLU A 34 ALA A 39 0 SHEET 2 S1 6 LYS A 4 LYS A 10 1 N VAL A 9 O ILE A 38 SHEET 3 S1 6 LYS A 59 CYS A 64 1 N GLY A 60 O LYS A 4 SHEET 4 S1 6 LYS A 84 ASP A 89 1 N ILE A 86 O PHE A 61 SHEET 5 S1 6 PRO A 104 ALA A 109 1 O PRO A 104 N ALA A 87 SHEET 6 S1 6 THR A 281 VAL A 283 1 N VAL A 283 O MET A 107 SHEET 1 S2 6 TYR A 170 VAL A 172 0 SHEET 2 S2 6 ALA A 136 THR A 141 1 N ALA A 139 O TYR A 170 SHEET 3 S2 6 TRP A 199 MET A 204 1 N LEU A 200 O ALA A 136 SHEET 4 S2 6 ASP A 225 ASN A 232 1 N ILE A 227 O TRP A 199 SHEET 5 S2 6 GLY A 247 LEU A 253 1 N GLY A 250 O GLY A 228 SHEET 6 S2 6 VAL A 287 ARG A 291 -1 N ILE A 289 O SER A 251 CRYST1 55.540 72.120 78.020 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018005 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012817 0.00000