PDB Short entry for 6EU6 HEADER MEMBRANE PROTEIN 28-OCT-17 6EU6 TITLE SENSOR AMT PROTEIN CAVEAT 6EU6 ZDM A 503 HAS WRONG CHIRALITY AT ATOM C3 ZDM A 503 HAS WRONG CAVEAT 2 6EU6 CHIRALITY AT ATOM C6 ZDM A 503 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 6EU6 C10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMMONIUM TRANSPORTER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUENENIA STUTTGARTIENSIS; SOURCE 3 ORGANISM_TAXID: 174633; SOURCE 4 GENE: AMTB, KUSTE3690; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43 KEYWDS AMMONIUM TRANSPORTER, SIGNALLING, HISTIDINE KINASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.PFLUEGER,C.HERNANDEZ,S.L.A.ANDRADE REVDAT 4 17-JAN-24 6EU6 1 REMARK REVDAT 3 20-FEB-19 6EU6 1 REMARK LINK REVDAT 2 31-JAN-18 6EU6 1 REMARK REVDAT 1 24-JAN-18 6EU6 0 JRNL AUTH T.PFLUGER,C.F.HERNANDEZ,P.LEWE,F.FRANK,H.MERTENS,D.SVERGUN, JRNL AUTH 2 M.W.BAUMSTARK,V.Y.LUNIN,M.S.M.JETTEN,S.L.A.ANDRADE JRNL TITL SIGNALING AMMONIUM ACROSS MEMBRANES THROUGH AN AMMONIUM JRNL TITL 2 SENSOR HISTIDINE KINASE. JRNL REF NAT COMMUN V. 9 164 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29323112 JRNL DOI 10.1038/S41467-017-02637-3 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1694 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3248 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3179 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4408 ; 1.964 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7280 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;38.253 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;14.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.054 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3581 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 777 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1624 ; 3.079 ; 3.402 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1623 ; 3.080 ; 3.399 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2030 ; 3.939 ; 5.081 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2031 ; 3.939 ; 5.084 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1624 ; 4.786 ; 4.028 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1621 ; 4.779 ; 4.024 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2373 ; 6.798 ; 5.833 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3962 ; 8.283 ;29.113 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3941 ; 8.274 ;29.063 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EU6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200007252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 86.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 1.46100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B2H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES/NAOH PH 7.0 24 % (W/V) OF REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.53450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.53450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.53450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -49.87250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -86.38170 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 49.87250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -86.38170 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 650 O HOH A 672 1.83 REMARK 500 NH2 ARG A 230 O2S MES A 502 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 200 CD GLU A 403 2445 0.50 REMARK 500 CZ ARG A 200 OE1 GLU A 403 2445 0.66 REMARK 500 NH2 ARG A 200 OE2 GLU A 403 2445 0.82 REMARK 500 NE ARG A 200 OE1 GLU A 403 2445 0.92 REMARK 500 NH2 ARG A 200 OE1 GLU A 403 2445 1.40 REMARK 500 CZ ARG A 200 CD GLU A 403 2445 1.41 REMARK 500 NH1 ARG A 200 OE1 GLU A 403 2445 1.94 REMARK 500 CZ ARG A 200 OE2 GLU A 403 2445 1.96 REMARK 500 NH2 ARG A 200 CG GLU A 403 2445 1.96 REMARK 500 NE ARG A 200 CD GLU A 403 2445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 31 CD GLU A 31 OE1 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 15 CG - SD - CE ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 318 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLU A 394 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 93 -109.79 27.21 REMARK 500 GLU A 117 -19.61 84.87 REMARK 500 ARG A 118 -11.11 -147.20 REMARK 500 ILE A 134 -70.75 -126.95 REMARK 500 VAL A 170 -61.15 -91.97 REMARK 500 SER A 283 10.19 -142.15 REMARK 500 VAL A 401 -62.89 -105.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 704 DISTANCE = 6.03 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ZDM A 503 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZDM A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 DBREF 6EU6 A 1 403 UNP Q1Q357 Q1Q357_KUEST 1 403 SEQADV 6EU6 ALA A 404 UNP Q1Q357 EXPRESSION TAG SEQADV 6EU6 ALA A 405 UNP Q1Q357 EXPRESSION TAG SEQRES 1 A 405 MET GLU ASN ILE GLN ILE ASN ILE ASN HIS LEU TRP VAL SEQRES 2 A 405 ILE MET ALA ALA CYS MET VAL PHE LEU MET GLN LEU GLY SEQRES 3 A 405 PHE THR SER TYR GLU THR GLY PHE SER GLN SER LYS ASN SEQRES 4 A 405 ALA ILE SER ILE ALA LEU ARG ASN LEU VAL ASP THR LEU SEQRES 5 A 405 ILE SER SER LEU VAL PHE PHE SER VAL GLY PHE GLY PHE SEQRES 6 A 405 MET PHE GLY LYS SER TYR MET GLY LEU ILE GLY ILE ASP SEQRES 7 A 405 LEU PHE PHE ALA ASN ASP LEU ALA LEU HIS PRO ASN THR SEQRES 8 A 405 LEU SER TYR SER PHE PHE PHE PHE GLN MET VAL PHE ALA SEQRES 9 A 405 SER THR ALA ALA THR ILE LEU THR GLY ALA ILE ALA GLU SEQRES 10 A 405 ARG SER GLY PHE ILE PRO ASN ILE ALA GLY THR ALA PHE SEQRES 11 A 405 ILE VAL ALA ILE ILE TYR PRO ILE PHE GLY HIS TRP ALA SEQRES 12 A 405 TRP GLY ASN LEU PHE SER PRO ASP GLN THR GLY TRP LEU SEQRES 13 A 405 LYS GLU LEU GLY PHE ILE ASP PHE ALA GLY ALA THR VAL SEQRES 14 A 405 VAL HIS SER ILE GLY GLY TRP PHE ALA MET ALA ALA ALA SEQRES 15 A 405 ILE MET VAL GLY PRO ARG ILE ASP LYS TYR ASN PRO ASP SEQRES 16 A 405 GLY SER SER ASN ARG ILE GLY LEU HIS ASN VAL PRO LEU SEQRES 17 A 405 ALA THR LEU GLY THR PHE PHE LEU TRP PHE GLY TRP PHE SEQRES 18 A 405 GLY PHE ASN GLY GLY SER LEU LEU ARG VAL SER VAL ASN SEQRES 19 A 405 ILE GLY LEU VAL ILE LEU ASN THR ASN MET ALA ALA ALA SEQRES 20 A 405 SER ALA GLY VAL SER ALA LEU ILE PHE ILE TYR ALA THR SEQRES 21 A 405 ARG LYS ARG ILE GLU ALA GLY SER LEU PHE THR ALA ILE SEQRES 22 A 405 LEU ALA GLY LEU VAL ALA ILE THR ALA SER SER ASN MET SEQRES 23 A 405 VAL THR PRO VAL SER ALA VAL ALA ILE GLY LEU ILE THR SEQRES 24 A 405 GLY ILE LEU ALA ILE ILE ALA GLU GLY PHE ILE GLU LYS SEQRES 25 A 405 THR LEU LYS ILE ASP ASP PRO VAL SER ALA ILE ALA VAL SEQRES 26 A 405 HIS GLY VAL GLY GLY VAL ILE GLY THR LEU CYS VAL ALA SEQRES 27 A 405 ILE PHE ALA GLN LYS SER TYR LEU LEU ALA GLU ASN GLY SEQRES 28 A 405 SER ARG MET HIS GLN LEU GLY ILE GLN ALA LEU GLY VAL SEQRES 29 A 405 ILE VAL ALA PHE SER TRP SER PHE GLY LEU GLY MET LEU SEQRES 30 A 405 PHE PHE LEU CYS LEU LYS LYS VAL LYS ARG LEU ARG VAL SEQRES 31 A 405 THR PRO GLU GLU GLU LYS ARG GLY LEU ASN VAL ALA GLU SEQRES 32 A 405 ALA ALA HET MES A 501 12 HET MES A 502 12 HET ZDM A 503 30 HET LMT A 504 35 HET NH4 A 505 1 HET NH4 A 506 1 HET SO4 A 507 5 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM ZDM NONYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM NH4 AMMONIUM ION HETNAM SO4 SULFATE ION HETSYN ZDM NONYL-BETA-D-MALTOSIDE FORMUL 2 MES 2(C6 H13 N O4 S) FORMUL 4 ZDM C21 H40 O11 FORMUL 5 LMT C24 H46 O11 FORMUL 6 NH4 2(H4 N 1+) FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *104(H2 O) HELIX 1 AA1 MET A 1 SER A 35 1 35 HELIX 2 AA2 GLN A 36 LYS A 38 5 3 HELIX 3 AA3 ASN A 39 VAL A 61 1 23 HELIX 4 AA4 VAL A 61 GLY A 68 1 8 HELIX 5 AA5 LEU A 79 ASN A 83 5 5 HELIX 6 AA6 ASP A 84 HIS A 88 5 5 HELIX 7 AA7 LEU A 92 ILE A 115 1 24 HELIX 8 AA8 GLY A 120 ILE A 134 1 15 HELIX 9 AA9 ILE A 134 GLY A 145 1 12 HELIX 10 AB1 GLY A 154 LEU A 159 1 6 HELIX 11 AB2 VAL A 170 GLY A 186 1 17 HELIX 12 AB3 ASN A 205 SER A 227 1 23 HELIX 13 AB4 VAL A 233 LYS A 262 1 30 HELIX 14 AB5 GLU A 265 THR A 281 1 17 HELIX 15 AB6 THR A 288 THR A 313 1 26 HELIX 16 AB7 SER A 321 ALA A 341 1 21 HELIX 17 AB8 GLN A 342 LEU A 346 5 5 HELIX 18 AB9 SER A 352 LYS A 386 1 35 HELIX 19 AC1 THR A 391 GLY A 398 1 8 SHEET 1 AA1 2 SER A 70 TYR A 71 0 SHEET 2 AA1 2 ILE A 75 GLY A 76 -1 O ILE A 75 N TYR A 71 SITE 1 AC1 11 GLN A 100 TRP A 144 LEU A 147 LYS A 157 SITE 2 AC1 11 ILE A 162 ASP A 163 PHE A 164 SER A 227 SITE 3 AC1 11 MES A 502 HOH A 612 HOH A 634 SITE 1 AC2 7 SER A 227 LEU A 228 ARG A 230 ASN A 285 SITE 2 AC2 7 TYR A 345 MES A 501 HOH A 603 SITE 1 AC3 6 ASN A 83 ASP A 84 ILE A 183 PRO A 187 SITE 2 AC3 6 LEU A 314 LYS A 315 SITE 1 AC4 14 GLY A 120 PHE A 121 ILE A 122 PRO A 123 SITE 2 AC4 14 TYR A 258 GLU A 349 ASN A 350 HIS A 355 SITE 3 AC4 14 ARG A 387 ARG A 389 GLU A 394 HOH A 613 SITE 4 AC4 14 HOH A 614 HOH A 659 SITE 1 AC5 6 GLN A 24 ASN A 47 ASP A 50 THR A 51 SITE 2 AC5 6 THR A 109 HOH A 604 SITE 1 AC6 4 GLU A 31 ASN A 47 THR A 109 THR A 112 SITE 1 AC7 4 SER A 42 ARG A 46 PHE A 121 HOH A 613 CRYST1 99.745 99.745 89.069 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010026 0.005788 0.000000 0.00000 SCALE2 0.000000 0.011577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011227 0.00000