PDB Short entry for 7ENL HEADER CARBON-OXYGEN LYASE 13-NOV-90 7ENL TITLE MECHANISM OF ENOLASE: THE CRYSTAL STRUCTURE OF ENOLASE-MG2+- TITLE 2 PHOSPHOGLYCERATE(SLASH) PHOSPHOENOLPYRUVATE COMPLEX AT 2.2-ANGSTROMS TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS CARBON-OXYGEN LYASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LEBIODA,B.STEC REVDAT 6 06-MAR-24 7ENL 1 REMARK SEQADV LINK REVDAT 5 29-NOV-17 7ENL 1 HELIX REVDAT 4 13-JUL-11 7ENL 1 VERSN REVDAT 3 24-FEB-09 7ENL 1 VERSN REVDAT 2 01-APR-03 7ENL 1 JRNL REVDAT 1 15-APR-92 7ENL 0 JRNL AUTH L.LEBIODA,B.STEC JRNL TITL MECHANISM OF ENOLASE: THE CRYSTAL STRUCTURE OF JRNL TITL 2 ENOLASE-MG2(+)-2-PHOSPHOGLYCERATE/PHOSPHOENOLPYRUVATE JRNL TITL 3 COMPLEX AT 2.2-A RESOLUTION. JRNL REF BIOCHEMISTRY V. 30 2817 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 2007120 JRNL DOI 10.1021/BI00225A012 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.LEBIODA,B.STEC,J.M.BREWER,E.TYKARSKA REMARK 1 TITL INHIBITION OF ENOLASE: THE CRYSTAL STRUCTURES OF REMARK 1 TITL 2 ENOLASE-CA2+-PHOSPHOGLYCERATE AND REMARK 1 TITL 3 ENOLASE-ZN2+-PHOSPHOGLYCOLATE COMPLEXES AT 2.2-ANGSTROMS REMARK 1 TITL 4 RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 30 2823 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.STEC,L.LEBIODA REMARK 1 TITL REFINED STRUCTURE OF YEAST APO-ENOLASE AT 2.25 ANGSTROMS REMARK 1 TITL 2 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 211 235 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.LEBIODA,B.STEC REMARK 1 TITL CRYSTAL STRUCTURE OF HOLOENZYME REFINED AT 1.9 ANGSTROMS REMARK 1 TITL 2 RESOLUTION: TRIGONAL-BIPYRAMIDAL GEOMETRY OF THE CATION REMARK 1 TITL 3 BINDING SITE REMARK 1 REF J.AM.CHEM.SOC. V. 111 8511 1989 REMARK 1 REFN ISSN 0002-7863 REMARK 1 REFERENCE 4 REMARK 1 AUTH L.LEBIODA,B.STEC,J.M.BREWER REMARK 1 TITL THE STRUCTURE OF YEAST ENOLASE AT 2.25-ANGSTROMS RESOLUTION. REMARK 1 TITL 2 AN 8-FOLD BETA+ALPHA-BARREL WITH A NOVEL BETA BETA ALPHA REMARK 1 TITL 3 ALPHA (BETA ALPHA)6 TOPOLOGY REMARK 1 REF J.BIOL.CHEM. V. 264 3685 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH L.LEBIODA,B.STEC REMARK 1 TITL CRYSTAL STRUCTURE OF ENOLASE INDICATES THAT ENOLASE AND REMARK 1 TITL 2 PYRUVATE KINASE EVOLVED FROM A COMMON ANCESTOR REMARK 1 REF NATURE V. 333 683 1988 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 6 REMARK 1 AUTH L.LEBIODA,J.M.BREWER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA FOR A REMARK 1 TITL 2 TETRAGONAL FORM OF YEAST ENOLASE REMARK 1 REF J.MOL.BIOL. V. 180 213 1984 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.051 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.071 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.175 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.230 ; 0.450 REMARK 3 MULTIPLE TORSION (A) : 0.280 ; 0.450 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.330 ; 0.450 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.400 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 20.200; 12.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 RESIDUES GLY 41 - VAL 42 AND PRO 265 - LYS 269 ARE PROBABLY REMARK 3 PARTIALLY DISORDERED. REMARK 4 REMARK 4 7ENL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.50000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.50000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.50000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.50000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 122.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 122.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 62 O HOH A 571 1.85 REMARK 500 O GLY A 41 OE2 GLU A 44 1.95 REMARK 500 NE2 GLN A 348 O HOH A 644 1.96 REMARK 500 CB SER A 158 O HOH A 576 2.00 REMARK 500 ND2 ASN A 155 O HOH A 621 2.00 REMARK 500 NH2 ARG A 391 OXT LEU A 436 2.01 REMARK 500 NH1 ARG A 14 OG SER A 375 2.01 REMARK 500 OD1 ASP A 361 O HOH A 735 2.04 REMARK 500 O ALA A 100 O HOH A 736 2.05 REMARK 500 OD1 ASN A 152 ND2 ASN A 155 2.05 REMARK 500 OG1 THR A 40 O HOH A 444 2.05 REMARK 500 OE1 GLN A 348 O HOH A 644 2.07 REMARK 500 O ALA A 176 O HOH A 670 2.11 REMARK 500 N LEU A 164 O GLN A 219 2.12 REMARK 500 OD1 ASP A 301 O HOH A 510 2.14 REMARK 500 O ARG A 119 O HOH A 508 2.15 REMARK 500 O LEU A 136 O HOH A 770 2.16 REMARK 500 O HOH A 618 O HOH A 630 2.17 REMARK 500 ND2 ASN A 264 O ASN A 266 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 79 O HOH A 643 3644 2.14 REMARK 500 CA ALA A 79 O HOH A 643 3644 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 8 NH1 - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 9.3 DEGREES REMARK 500 TYR A 11 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 12 OD1 - CG - OD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 14 NH1 - CZ - NH2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -8.3 DEGREES REMARK 500 VAL A 19 CA - CB - CG1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 31 CD - NE - CZ ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 SER A 36 CA - CB - OG ANGL. DEV. = 22.7 DEGREES REMARK 500 VAL A 42 N - CA - CB ANGL. DEV. = -16.2 DEGREES REMARK 500 GLU A 47 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 GLU A 47 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 GLU A 47 CB - CG - CD ANGL. DEV. = 40.8 DEGREES REMARK 500 MET A 48 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 49 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP A 52 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = -8.6 DEGREES REMARK 500 GLU A 124 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 GLU A 124 CG - CD - OE1 ANGL. DEV. = -14.1 DEGREES REMARK 500 TYR A 130 CB - CG - CD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 TYR A 130 CB - CG - CD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU A 133 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 LEU A 133 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LYS A 140 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 THR A 141 CA - CB - OG1 ANGL. DEV. = -13.3 DEGREES REMARK 500 THR A 141 CA - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 SER A 142 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 LEU A 146 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 SER A 158 N - CA - CB ANGL. DEV. = -9.3 DEGREES REMARK 500 HIS A 159 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 GLY A 161 N - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 GLY A 161 CA - C - O ANGL. DEV. = 11.2 DEGREES REMARK 500 GLY A 162 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 GLU A 168 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU A 168 OE1 - CD - OE2 ANGL. DEV. = -11.8 DEGREES REMARK 500 TYR A 201 CB - CG - CD2 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR A 201 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASN A 207 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP A 210 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 210 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 GLU A 223 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 GLU A 223 CG - CD - OE2 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 102 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -16.79 -49.84 REMARK 500 THR A 40 113.76 -168.61 REMARK 500 VAL A 71 -69.75 -102.54 REMARK 500 ASN A 126 35.40 78.38 REMARK 500 ALA A 160 -144.82 -172.06 REMARK 500 LEU A 164 101.90 -32.66 REMARK 500 PRO A 173 65.80 -65.42 REMARK 500 HIS A 237 40.04 -109.85 REMARK 500 LYS A 263 23.26 109.89 REMARK 500 PRO A 265 60.99 -40.63 REMARK 500 ASN A 266 60.97 -117.04 REMARK 500 SER A 267 72.26 -46.56 REMARK 500 ASP A 268 104.51 -50.02 REMARK 500 SER A 270 -12.10 165.97 REMARK 500 GLU A 300 -9.91 -59.87 REMARK 500 ASP A 320 -78.18 -117.56 REMARK 500 VAL A 324 41.76 28.44 REMARK 500 THR A 325 16.85 53.95 REMARK 500 ASP A 340 14.89 -147.97 REMARK 500 ARG A 402 126.24 94.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 264 PRO A 265 -70.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 264 -22.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 438 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 246 OD2 REMARK 620 2 GLU A 295 OE2 93.9 REMARK 620 3 ASP A 320 OD2 172.0 78.2 REMARK 620 4 2PG A 439 O3 87.1 106.2 96.4 REMARK 620 5 HOH A 448 O 87.8 115.9 94.3 137.9 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET PRESENTED AS *BAR* ON SHEET RECORDS BELOW IS REMARK 700 ACTUALLY AN EIGHT-STRANDED BETA-BARREL. THIS IS REMARK 700 REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND REMARK 700 LAST STRANDS ARE IDENTICAL. THERE IS A SMALL STRAND BONDED REMARK 700 TO THE END OF STRAND 1 OF THE BARREL. THIS SMALL STRAND REMARK 700 STRAND AND STRAND 1 ARE PRESENTED AS SHEET S1. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: MEI REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: metal ion binding site REMARK 800 REMARK 800 SITE_IDENTIFIER: PHO REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: phosphate binding site REMARK 800 REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: catalytic and substrate binding site REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PG A 439 DBREF 7ENL A 1 436 UNP P00924 ENO1_YEAST 1 436 SEQADV 7ENL SER A 84 UNP P00924 LYS 84 CONFLICT SEQRES 1 A 436 ALA VAL SER LYS VAL TYR ALA ARG SER VAL TYR ASP SER SEQRES 2 A 436 ARG GLY ASN PRO THR VAL GLU VAL GLU LEU THR THR GLU SEQRES 3 A 436 LYS GLY VAL PHE ARG SER ILE VAL PRO SER GLY ALA SER SEQRES 4 A 436 THR GLY VAL HIS GLU ALA LEU GLU MET ARG ASP GLY ASP SEQRES 5 A 436 LYS SER LYS TRP MET GLY LYS GLY VAL LEU HIS ALA VAL SEQRES 6 A 436 LYS ASN VAL ASN ASP VAL ILE ALA PRO ALA PHE VAL LYS SEQRES 7 A 436 ALA ASN ILE ASP VAL SER ASP GLN LYS ALA VAL ASP ASP SEQRES 8 A 436 PHE LEU ILE SER LEU ASP GLY THR ALA ASN LYS SER LYS SEQRES 9 A 436 LEU GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA ALA SEQRES 10 A 436 SER ARG ALA ALA ALA ALA GLU LYS ASN VAL PRO LEU TYR SEQRES 11 A 436 LYS HIS LEU ALA ASP LEU SER LYS SER LYS THR SER PRO SEQRES 12 A 436 TYR VAL LEU PRO VAL PRO PHE LEU ASN VAL LEU ASN GLY SEQRES 13 A 436 GLY SER HIS ALA GLY GLY ALA LEU ALA LEU GLN GLU PHE SEQRES 14 A 436 MET ILE ALA PRO THR GLY ALA LYS THR PHE ALA GLU ALA SEQRES 15 A 436 LEU ARG ILE GLY SER GLU VAL TYR HIS ASN LEU LYS SER SEQRES 16 A 436 LEU THR LYS LYS ARG TYR GLY ALA SER ALA GLY ASN VAL SEQRES 17 A 436 GLY ASP GLU GLY GLY VAL ALA PRO ASN ILE GLN THR ALA SEQRES 18 A 436 GLU GLU ALA LEU ASP LEU ILE VAL ASP ALA ILE LYS ALA SEQRES 19 A 436 ALA GLY HIS ASP GLY LYS VAL LYS ILE GLY LEU ASP CYS SEQRES 20 A 436 ALA SER SER GLU PHE PHE LYS ASP GLY LYS TYR ASP LEU SEQRES 21 A 436 ASP PHE LYS ASN PRO ASN SER ASP LYS SER LYS TRP LEU SEQRES 22 A 436 THR GLY PRO GLN LEU ALA ASP LEU TYR HIS SER LEU MET SEQRES 23 A 436 LYS ARG TYR PRO ILE VAL SER ILE GLU ASP PRO PHE ALA SEQRES 24 A 436 GLU ASP ASP TRP GLU ALA TRP SER HIS PHE PHE LYS THR SEQRES 25 A 436 ALA GLY ILE GLN ILE VAL ALA ASP ASP LEU THR VAL THR SEQRES 26 A 436 ASN PRO LYS ARG ILE ALA THR ALA ILE GLU LYS LYS ALA SEQRES 27 A 436 ALA ASP ALA LEU LEU LEU LYS VAL ASN GLN ILE GLY THR SEQRES 28 A 436 LEU SER GLU SER ILE LYS ALA ALA GLN ASP SER PHE ALA SEQRES 29 A 436 ALA GLY TRP GLY VAL MET VAL SER HIS ARG SER GLY GLU SEQRES 30 A 436 THR GLU ASP THR PHE ILE ALA ASP LEU VAL VAL GLY LEU SEQRES 31 A 436 ARG THR GLY GLN ILE LYS THR GLY ALA PRO ALA ARG SER SEQRES 32 A 436 GLU ARG LEU ALA LYS LEU ASN GLN LEU LEU ARG ILE GLU SEQRES 33 A 436 GLU GLU LEU GLY ASP ASN ALA VAL PHE ALA GLY GLU ASN SEQRES 34 A 436 PHE HIS HIS GLY ASP LYS LEU HET MG A 438 1 HET 2PG A 439 11 HETNAM MG MAGNESIUM ION HETNAM 2PG 2-PHOSPHOGLYCERIC ACID FORMUL 2 MG MG 2+ FORMUL 3 2PG C3 H7 O7 P FORMUL 4 HOH *347(H2 O) HELIX 1 I LEU A 62 ALA A 79 1BROKEN BY PRO 74 18 HELIX 2 J GLN A 86 ASP A 97 1 12 HELIX 3 K ALA A 107 GLU A 124 1 18 HELIX 4 L LEU A 129 LEU A 136 1 8 HELIX 5 A PHE A 179 ARG A 200 1 22 HELIX 6 A10 ALA A 203 GLY A 206 5 4 HELIX 7 B ALA A 221 ALA A 234 1 14 HELIX 8 B10 SER A 249 GLU A 251 5 3 HELIX 9 C GLY A 275 ARG A 288 1 14 HELIX 10 D TRP A 303 LYS A 311 1 9 HELIX 11 D10 ASP A 320 THR A 323 5 4 HELIX 12 E PRO A 327 GLU A 335 1 9 HELIX 13 E10 VAL A 346 ILE A 349 5 4 HELIX 14 F LEU A 352 ALA A 364 1 13 HELIX 15 G PHE A 382 LEU A 390 1 9 HELIX 16 H SER A 403 LEU A 419 1 17 SHEET 1 MEA 3 LYS A 4 ASP A 12 0 SHEET 2 MEA 3 ASN A 16 THR A 25 -1 O THR A 24 N LYS A 4 SHEET 3 MEA 3 VAL A 29 VAL A 34 -1 N VAL A 34 O VAL A 19 SHEET 1 BAR 9 TYR A 144 ASN A 155 0 SHEET 2 BAR 9 GLU A 168 PRO A 173 -1 O ILE A 171 N LEU A 151 SHEET 3 BAR 9 VAL A 241 ASP A 246 -1 N LYS A 242 O ALA A 172 SHEET 4 BAR 9 SER A 293 GLU A 295 1 O SER A 293 N LEU A 245 SHEET 5 BAR 9 GLN A 316 ALA A 319 1 O GLN A 316 N ILE A 294 SHEET 6 BAR 9 ASP A 340 LYS A 345 1 N ALA A 341 O ILE A 317 SHEET 7 BAR 9 GLY A 368 HIS A 373 1 N GLY A 368 O ASP A 340 SHEET 8 BAR 9 GLN A 394 LYS A 396 1 O GLN A 394 N VAL A 371 SHEET 9 BAR 9 TYR A 144 ASN A 155 1 O VAL A 148 N ILE A 395 SHEET 1 S1 2 TYR A 144 ASN A 155 0 SHEET 2 S1 2 ASN A 422 PHE A 425 1 O ASN A 422 N TYR A 144 LINK OD2 ASP A 246 MG MG A 438 1555 1555 2.16 LINK OE2 GLU A 295 MG MG A 438 1555 1555 1.82 LINK OD2 ASP A 320 MG MG A 438 1555 1555 2.01 LINK MG MG A 438 O3 2PG A 439 1555 1555 1.99 LINK MG MG A 438 O HOH A 448 1555 1555 1.79 CISPEP 1 SER A 142 PRO A 143 0 -2.18 SITE 1 MEI 3 ASP A 246 GLU A 295 ASP A 320 SITE 1 PHO 1 ARG A 374 SITE 1 CAT 5 GLU A 168 GLU A 211 LYS A 345 HIS A 373 SITE 2 CAT 5 LYS A 396 SITE 1 AC1 5 ASP A 246 GLU A 295 ASP A 320 2PG A 439 SITE 2 AC1 5 HOH A 448 SITE 1 AC2 18 GLY A 37 ALA A 38 THR A 40 GLN A 167 SITE 2 AC2 18 GLU A 168 ASP A 246 GLU A 295 ASP A 320 SITE 3 AC2 18 LEU A 343 LYS A 345 SER A 372 HIS A 373 SITE 4 AC2 18 ARG A 374 SER A 375 LYS A 396 MG A 438 SITE 5 AC2 18 HOH A 525 HOH A 549 CRYST1 122.000 122.000 67.000 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014925 0.00000