PDB Short entry for 8TIM HEADER ISOMERASE 25-AUG-98 8TIM TITLE TRIOSE PHOSPHATE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSE PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 CELL_LINE: 293; SOURCE 6 ORGAN: BREAST; SOURCE 7 TISSUE: MUSCLE KEYWDS ISOMERASE, GLYCOLYSIS, GLUCONEOGENESIS, FATTY ACID BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR P.J.ARTYMIUK,W.R.TAYLOR,D.C.PHILLIPS REVDAT 4 14-FEB-24 8TIM 1 REMARK SEQADV REVDAT 3 04-APR-18 8TIM 1 REMARK REVDAT 2 24-FEB-09 8TIM 1 VERSN REVDAT 1 16-FEB-99 8TIM 0 JRNL AUTH P.J.ARTYMIUK,W.R.TAYLOR,D.C.PHILLIPS JRNL TITL TRIOSE PHOSPHATE ISOMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.L.CHANG,P.J.ARTYMIUK,X.WU,S.HOLLAN,A.LAMMI,L.E.MAQUAT REMARK 1 TITL HUMAN TRIOSEPHOSPHATE ISOMERASE DEFICIENCY RESULTING FROM REMARK 1 TITL 2 MUTATION OF PHE-240 REMARK 1 REF AM.J.HUM.GENET. V. 52 1260 1993 REMARK 1 REFN ISSN 0002-9297 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.O.DAAR,P.J.ARTYMIUK,D.C.PHILLIPS,L.E.MAQUAT REMARK 1 TITL HUMAN TRIOSE-PHOSPHATE ISOMERASE DEFICIENCY: A SINGLE AMINO REMARK 1 TITL 2 ACID SUBSTITUTION RESULTS IN A THERMOLABILE ENZYME REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 83 7903 1986 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.ALBER,D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.PHILLIPS, REMARK 1 AUTH 2 P.S.RIVERS,I.A.WILSON REMARK 1 TITL ON THE THREE-DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM REMARK 1 TITL 2 OF TRIOSE PHOSPHATE ISOMERASE REMARK 1 REF PHILOS.TRANS.R.SOC.LONDON, V. 293 159 1981 REMARK 1 REF 2 SER.B REMARK 1 REFN ISSN 0080-4622 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.C.PHILLIPS,I.A.WILSON REMARK 1 TITL ATOMIC COORDINATES FOR TRIOSE PHOSPHATE ISOMERASE FROM REMARK 1 TITL 2 CHICKEN MUSCLE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 72 146 1976 REMARK 1 REFN ISSN 0006-291X REMARK 1 REFERENCE 5 REMARK 1 AUTH C.A.BROWNE,I.D.CAMPBELL,P.A.KIENER,D.C.PHILLIPS,S.G.WALEY, REMARK 1 AUTH 2 I.A.WILSON REMARK 1 TITL STUDIES OF THE HISTIDINE RESIDUES OF TRIOSE PHOSPHATE REMARK 1 TITL 2 ISOMERASE BY PROTON MAGNETIC RESONANCE AND X-RAY REMARK 1 TITL 3 CRYSTALLOGRAPHY REMARK 1 REF J.MOL.BIOL. V. 100 319 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 511 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL ROCKVILLE, MD. : TRACOR JITCO INC. REMARK 1 REFN REMARK 1 REFERENCE 7 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 103 1976 REMARK 1 REF 2 AND STRUCTURE (DATA SECTION) REMARK 1 PUBL SILVER SPRING, MD. : NATIONAL BIOMEDICAL RESEARCH FOUNDATION REMARK 1 REFN REMARK 1 REFERENCE 8 REMARK 1 AUTH D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.C.PHILLIPS,C.I.POGSON, REMARK 1 AUTH 2 I.A.WILSON,P.H.CORRAN,A.J.FURTH,J.D.MILMAN,R.E.OFFORD, REMARK 1 AUTH 3 J.D.PRIDDLE,S.G.WALEY REMARK 1 TITL STRUCTURE OF CHICKEN MUSCLE TRIOSE PHOSPHATE ISOMERASE REMARK 1 TITL 2 DETERMINED CRYSTALLOGRAPHICALLY AT 2.5 ANGSTROM RESOLUTION REMARK 1 TITL 3 USING AMINO ACID SEQUENCE DATA REMARK 1 REF NATURE V. 255 609 1975 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 9 REMARK 1 AUTH D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.C.PHILLIPS,C.I.POGSON REMARK 1 TITL CRYSTALLOGRAPHIC STUDIES OF CHICKEN TRIOSE PHOSPHATE REMARK 1 TITL 2 ISOMERASE REMARK 1 REF COLD SPRING HARBOR V. 36 151 1972 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1770 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1770 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.029 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000180021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-75 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : HILGER-WATTS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17023 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.00500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.00500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 219 OG SER A 222 2.03 REMARK 500 OE2 GLU B 129 NH1 ARG B 134 2.11 REMARK 500 O2 SO4 B 560 O HOH B 621 2.12 REMARK 500 OE2 GLU A 129 CD1 TRP A 168 2.17 REMARK 500 O ALA A 246 N HIS A 248 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 79 CB SER A 79 OG -0.082 REMARK 500 HIS A 95 NE2 HIS A 95 CD2 -0.067 REMARK 500 SER B 79 CB SER B 79 OG 0.079 REMARK 500 GLY B 122 CA GLY B 122 C 0.103 REMARK 500 GLY B 190 N GLY B 190 CA 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 4 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 4 CD - NE - CZ ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 4 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 LYS A 13 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP A 17 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 LEU A 21 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ALA A 31 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 SER A 34 CA - C - O ANGL. DEV. = -15.1 DEGREES REMARK 500 SER A 34 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 ALA A 35 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 ALA A 35 N - CA - CB ANGL. DEV. = 25.5 DEGREES REMARK 500 ALA A 35 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 ASP A 36 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 36 N - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 ASP A 36 O - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 38 OE1 - CD - OE2 ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU A 38 CG - CD - OE1 ANGL. DEV. = 18.1 DEGREES REMARK 500 CYS A 41 N - CA - CB ANGL. DEV. = 9.5 DEGREES REMARK 500 CYS A 41 CA - CB - SG ANGL. DEV. = -11.9 DEGREES REMARK 500 ILE A 46 CA - CB - CG2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG A 52 NH1 - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU A 55 O - C - N ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP A 56 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP A 56 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 56 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 LYS A 58 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 VAL A 69 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 LYS A 71 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 LYS A 71 CA - CB - CG ANGL. DEV. = 21.9 DEGREES REMARK 500 LYS A 71 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 GLY A 72 N - CA - C ANGL. DEV. = 21.1 DEGREES REMARK 500 SER A 79 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 ILE A 92 N - CA - CB ANGL. DEV. = 14.6 DEGREES REMARK 500 SER A 96 CA - CB - OG ANGL. DEV. = 22.1 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 99 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 HIS A 100 CA - CB - CG ANGL. DEV. = -15.1 DEGREES REMARK 500 HIS A 100 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 HIS A 100 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 PHE A 102 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 GLU A 107 CA - CB - CG ANGL. DEV. = 49.4 DEGREES REMARK 500 GLU A 107 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 LYS A 112 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 ALA A 114 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 191 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 53.20 -65.24 REMARK 500 ARG A 4 118.99 -22.55 REMARK 500 LYS A 13 -150.84 61.56 REMARK 500 ASP A 36 -41.99 130.52 REMARK 500 ASN A 65 160.37 166.16 REMARK 500 TRP A 157 -8.54 -58.18 REMARK 500 TRP A 168 -28.47 -38.08 REMARK 500 ALA A 169 -78.09 -110.68 REMARK 500 ILE A 170 -67.29 -21.63 REMARK 500 THR A 172 10.69 -168.70 REMARK 500 LYS A 174 -127.01 55.39 REMARK 500 THR A 175 -93.22 -130.52 REMARK 500 VAL A 196 -74.10 -127.61 REMARK 500 ASN A 245 24.53 -79.03 REMARK 500 ALA A 246 -80.71 -57.08 REMARK 500 LYS A 247 94.27 -45.68 REMARK 500 LYS B 13 -146.10 56.15 REMARK 500 ASN B 65 169.65 175.82 REMARK 500 LYS B 68 0.79 -57.03 REMARK 500 ALA B 73 61.06 -65.17 REMARK 500 ALA B 136 -5.02 -58.57 REMARK 500 ASP B 152 14.67 -60.18 REMARK 500 VAL B 196 -76.83 -111.51 REMARK 500 ASN B 245 59.64 -104.97 REMARK 500 ALA B 246 -87.57 -93.83 REMARK 500 LYS B 247 89.28 -43.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 52 0.16 SIDE CHAIN REMARK 500 ARG A 99 0.17 SIDE CHAIN REMARK 500 ARG A 134 0.12 SIDE CHAIN REMARK 500 ARG A 205 0.09 SIDE CHAIN REMARK 500 ARG B 52 0.14 SIDE CHAIN REMARK 500 ARG B 99 0.09 SIDE CHAIN REMARK 500 ARG B 134 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 561 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHICKEN TRIOSE PHOSPHATE ISOMERASE HAS 247 AMINO ACID REMARK 999 RESIDUES. THEY ARE NUMBERED 2-248 FOR EASE OF COMPARISON REMARK 999 WITH THE SEQUENCE OF RABBIT TRIOSE PHOSPHATE ISOMERASE. DBREF 8TIM A 2 248 UNP P00940 TPIS_CHICK 1 247 DBREF 8TIM B 2 248 UNP P00940 TPIS_CHICK 1 247 SEQADV 8TIM THR A 194 UNP P00940 SER 193 CONFLICT SEQADV 8TIM THR B 194 UNP P00940 SER 193 CONFLICT SEQRES 1 A 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 A 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 A 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 A 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 A 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 A 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 A 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 A 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 A 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 A 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 A 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 A 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 A 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 247 GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN GLU SEQRES 15 A 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS THR HIS VAL SEQRES 16 A 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 A 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 A 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS SEQRES 1 B 247 ALA PRO ARG LYS PHE PHE VAL GLY GLY ASN TRP LYS MET SEQRES 2 B 247 ASN GLY ASP LYS LYS SER LEU GLY GLU LEU ILE HIS THR SEQRES 3 B 247 LEU ASN GLY ALA LYS LEU SER ALA ASP THR GLU VAL VAL SEQRES 4 B 247 CYS GLY ALA PRO SER ILE TYR LEU ASP PHE ALA ARG GLN SEQRES 5 B 247 LYS LEU ASP ALA LYS ILE GLY VAL ALA ALA GLN ASN CYS SEQRES 6 B 247 TYR LYS VAL PRO LYS GLY ALA PHE THR GLY GLU ILE SER SEQRES 7 B 247 PRO ALA MET ILE LYS ASP ILE GLY ALA ALA TRP VAL ILE SEQRES 8 B 247 LEU GLY HIS SER GLU ARG ARG HIS VAL PHE GLY GLU SER SEQRES 9 B 247 ASP GLU LEU ILE GLY GLN LYS VAL ALA HIS ALA LEU ALA SEQRES 10 B 247 GLU GLY LEU GLY VAL ILE ALA CYS ILE GLY GLU LYS LEU SEQRES 11 B 247 ASP GLU ARG GLU ALA GLY ILE THR GLU LYS VAL VAL PHE SEQRES 12 B 247 GLU GLN THR LYS ALA ILE ALA ASP ASN VAL LYS ASP TRP SEQRES 13 B 247 SER LYS VAL VAL LEU ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 247 GLY THR GLY LYS THR ALA THR PRO GLN GLN ALA GLN GLU SEQRES 15 B 247 VAL HIS GLU LYS LEU ARG GLY TRP LEU LYS THR HIS VAL SEQRES 16 B 247 SER ASP ALA VAL ALA GLN SER THR ARG ILE ILE TYR GLY SEQRES 17 B 247 GLY SER VAL THR GLY GLY ASN CYS LYS GLU LEU ALA SER SEQRES 18 B 247 GLN HIS ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN ALA LYS HIS HET SO4 A 561 5 HET SO4 B 560 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *34(H2 O) HELIX 1 1 LYS A 18 GLY A 30 1 13 HELIX 2 2 SER A 45 LYS A 54 5 10 HELIX 3 3 PRO A 80 ILE A 86 1 7 HELIX 4 4 SER A 96 HIS A 100 1 5 HELIX 5 5 ASP A 106 ALA A 118 1 13 HELIX 6 6 LEU A 131 ALA A 136 1 6 HELIX 7 7 THR A 139 ASN A 153 1 15 HELIX 8 8 TRP A 157 LYS A 159 5 3 HELIX 9 9 VAL A 167 ILE A 170 1 4 HELIX 10 10 PRO A 178 HIS A 195 1 18 HELIX 11 11 ASP A 198 SER A 203 1 6 HELIX 12 12 CYS A 217 SER A 222 1 6 HELIX 13 13 GLY A 233 LEU A 236 5 4 HELIX 14 14 PRO A 238 ILE A 244 5 7 HELIX 15 15 LYS B 18 ASN B 29 1 12 HELIX 16 16 SER B 45 LYS B 54 5 10 HELIX 17 17 PRO B 80 ILE B 86 1 7 HELIX 18 18 SER B 96 HIS B 100 1 5 HELIX 19 19 ASP B 106 GLU B 119 1 14 HELIX 20 20 LEU B 131 GLU B 135 1 5 HELIX 21 21 THR B 139 ASN B 153 1 15 HELIX 22 22 TRP B 157 LYS B 159 5 3 HELIX 23 23 VAL B 167 ALA B 169 5 3 HELIX 24 24 PRO B 178 HIS B 195 1 18 HELIX 25 25 ASP B 198 SER B 203 1 6 HELIX 26 26 CYS B 217 SER B 222 1 6 HELIX 27 27 GLY B 233 SER B 235 5 3 HELIX 28 28 PRO B 238 ILE B 244 5 7 SHEET 1 A 4 GLY A 228 VAL A 231 0 SHEET 2 A 4 PHE A 6 ASN A 11 1 N PHE A 7 O PHE A 229 SHEET 3 A 4 THR A 37 ALA A 43 1 N GLU A 38 O PHE A 6 SHEET 4 A 4 GLY A 60 ALA A 63 1 N GLY A 60 O CYS A 41 SHEET 1 B 4 TRP A 90 LEU A 93 0 SHEET 2 B 4 GLY A 122 ILE A 127 1 N GLY A 122 O VAL A 91 SHEET 3 B 4 VAL A 160 TYR A 164 1 N VAL A 161 O VAL A 123 SHEET 4 B 4 ILE A 206 TYR A 208 1 N ILE A 207 O LEU A 162 SHEET 1 C 4 GLY B 228 VAL B 231 0 SHEET 2 C 4 PHE B 6 ASN B 11 1 N PHE B 7 O PHE B 229 SHEET 3 C 4 THR B 37 ALA B 43 1 N GLU B 38 O PHE B 6 SHEET 4 C 4 GLY B 60 ALA B 63 1 N GLY B 60 O CYS B 41 SHEET 1 D 4 TRP B 90 LEU B 93 0 SHEET 2 D 4 GLY B 122 ILE B 127 1 N GLY B 122 O VAL B 91 SHEET 3 D 4 VAL B 160 TYR B 164 1 N VAL B 161 O VAL B 123 SHEET 4 D 4 ILE B 206 TYR B 208 1 N ILE B 207 O LEU B 162 SITE 1 AC1 5 SER B 211 GLY B 232 GLY B 233 HOH B 621 SITE 2 AC1 5 HOH B 622 SITE 1 AC2 3 ILE A 170 SER A 211 GLY A 233 CRYST1 106.010 74.760 61.740 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016197 0.00000 MTRIX1 1 0.726910 0.098420 -0.679640 6.66288 1 MTRIX2 1 0.101010 -0.994240 -0.035940 88.10081 1 MTRIX3 1 -0.679260 -0.042530 -0.732660 29.74523 1