PDB Short entry for 9PAP HEADER HYDROLASE (SULFHYDRYL PROTEINASE) 31-MAR-86 9PAP TITLE STRUCTURE OF PAPAIN REFINED AT 1.65 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARICA PAPAYA; SOURCE 3 ORGANISM_COMMON: PAPAYA; SOURCE 4 ORGANISM_TAXID: 3649 KEYWDS HYDROLASE (SULFHYDRYL PROTEINASE) EXPDTA X-RAY DIFFRACTION AUTHOR I.G.KAMPHUIS,J.DRENTH REVDAT 7 29-NOV-17 9PAP 1 HELIX REVDAT 6 24-FEB-09 9PAP 1 VERSN REVDAT 5 01-APR-03 9PAP 1 JRNL REVDAT 4 15-JAN-95 9PAP 1 SPRSDE REVDAT 3 31-OCT-93 9PAP 1 HET REVDAT 2 15-OCT-92 9PAP 1 SHEET REVDAT 1 24-OCT-86 9PAP 0 SPRSDE 24-OCT-86 9PAP 3PAD 8PAP JRNL AUTH I.G.KAMPHUIS,K.H.KALK,M.B.SWARTE,J.DRENTH JRNL TITL STRUCTURE OF PAPAIN REFINED AT 1.65 A RESOLUTION JRNL REF J.MOL.BIOL. V. 179 233 1984 JRNL REFN ISSN 0022-2836 JRNL PMID 6502713 JRNL DOI 10.1016/0022-2836(84)90467-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.G.KAMPHUIS,J.DRENTH,E.N.BAKER REMARK 1 TITL THIOL PROTEASES. COMPARATIVE STUDIES BASED ON THE REMARK 1 TITL 2 HIGH-RESOLUTION STRUCTURES OF PAPAIN AND ACTINIDIN, AND ON REMARK 1 TITL 3 AMINO ACID SEQUENCE INFORMATION FOR CATHEPSINS B AND H, AND REMARK 1 TITL 4 STEM BROMELAIN REMARK 1 REF J.MOL.BIOL. V. 182 317 1985 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.DRENTH,K.H.KALK,H.M.SWEN REMARK 1 TITL BINDING OF CHLOROMETHYL KETONE SUBSTRATE ANALOGUES TO REMARK 1 TITL 2 CRYSTALLINE PAPAIN REMARK 1 REF BIOCHEMISTRY V. 15 3731 1976 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.DRENTH,J.N.JANSONIUS,R.KOEKOEK,B.G.WOLTHERS REMARK 1 TITL THE STRUCTURE OF PAPAIN REMARK 1 REF ADV.PROTEIN CHEM. V. 25 79 1971 REMARK 1 REFN ISSN 0065-3233 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.DRENTH,J.N.JANSONIUS,R.KOEKOEK,L.A.A.SLUYTERMAN, REMARK 1 AUTH 2 B.G.WOLTHERS REMARK 1 TITL THE STRUCTURE OF THE PAPAIN MOLECULE REMARK 1 REF PHILOS.TRANS.R.SOC.LONDON, V. 257 231 1970 REMARK 1 REF 2 SER.B REMARK 1 REFN ISSN 0080-4622 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.DRENTH,J.N.JANSONIUS,R.KOEKOEK,H.M.SWEN,B.G.WOLTHERS REMARK 1 TITL STRUCTURE OF PAPAIN REMARK 1 REF NATURE V. 218 929 1968 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.047 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9PAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000180069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.44000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.44000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 139 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 46 O HOH A 384 1.97 REMARK 500 O MOH A 225 O HOH A 282 2.04 REMARK 500 O HOH A 284 O HOH A 339 2.07 REMARK 500 O HOH A 314 O HOH A 322 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 26 NE1 TRP A 26 CE2 -0.093 REMARK 500 GLU A 52 CD GLU A 52 OE2 -0.076 REMARK 500 TRP A 69 NE1 TRP A 69 CE2 -0.095 REMARK 500 TYR A 86 CD1 TYR A 86 CE1 0.096 REMARK 500 TYR A 88 CD1 TYR A 88 CE1 0.090 REMARK 500 CYS A 95 CA CYS A 95 CB -0.101 REMARK 500 GLU A 99 CG GLU A 99 CD 0.102 REMARK 500 TYR A 166 CD1 TYR A 166 CE1 0.090 REMARK 500 TYR A 170 CD1 TYR A 170 CE1 0.091 REMARK 500 GLU A 183 CD GLU A 183 OE2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 3 OE1 - CD - OE2 ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLN A 9 CA - CB - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 GLN A 9 CB - CG - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 GLY A 23 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 VAL A 32 CA - CB - CG2 ANGL. DEV. = 12.1 DEGREES REMARK 500 GLU A 35 OE1 - CD - OE2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 45 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 TYR A 48 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 52 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 58 CB - CG - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 59 CB - CG - CD ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 59 CG - CD - NE ANGL. DEV. = 13.3 DEGREES REMARK 500 TYR A 61 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 67 CB - CG - CD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 82 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 83 NH1 - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASN A 84 CA - CB - CG ANGL. DEV. = -16.7 DEGREES REMARK 500 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU A 89 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 93 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 TYR A 94 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 CYS A 95 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 98 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 GLU A 99 CG - CD - OE1 ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP A 108 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 ASP A 108 CB - CG - OD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 108 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 VAL A 110 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLN A 142 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 145 CD - NE - CZ ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 145 NH1 - CZ - NH2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 145 NE - CZ - NH1 ANGL. DEV. = -7.6 DEGREES REMARK 500 PHE A 149 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASN A 155 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 TYR A 166 CB - CG - CD2 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR A 166 CB - CG - CD1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASN A 169 CB - CG - OD1 ANGL. DEV. = 14.7 DEGREES REMARK 500 TYR A 170 CB - CG - CD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 GLU A 183 OE1 - CD - OE2 ANGL. DEV. = 14.3 DEGREES REMARK 500 TYR A 186 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 186 CG - CD1 - CE1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL A 199 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 156.49 -47.68 REMARK 500 SER A 21 52.05 -94.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 111 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 58 -13.52 REMARK 500 ARG A 59 10.44 REMARK 500 CYS A 200 -10.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 240 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOH A 242 DBREF 9PAP A 1 212 UNP P00784 PAPA_CARPA 134 345 SEQADV 9PAP GLN A 47 UNP P00784 GLU 180 CONFLICT SEQADV 9PAP GLN A 118 UNP P00784 GLU 251 CONFLICT SEQADV 9PAP GLN A 135 UNP P00784 GLU 268 CONFLICT SEQRES 1 A 212 ILE PRO GLU TYR VAL ASP TRP ARG GLN LYS GLY ALA VAL SEQRES 2 A 212 THR PRO VAL LYS ASN GLN GLY SER CYS GLY SER OCS TRP SEQRES 3 A 212 ALA PHE SER ALA VAL VAL THR ILE GLU GLY ILE ILE LYS SEQRES 4 A 212 ILE ARG THR GLY ASN LEU ASN GLN TYR SER GLU GLN GLU SEQRES 5 A 212 LEU LEU ASP CYS ASP ARG ARG SER TYR GLY CYS ASN GLY SEQRES 6 A 212 GLY TYR PRO TRP SER ALA LEU GLN LEU VAL ALA GLN TYR SEQRES 7 A 212 GLY ILE HIS TYR ARG ASN THR TYR PRO TYR GLU GLY VAL SEQRES 8 A 212 GLN ARG TYR CYS ARG SER ARG GLU LYS GLY PRO TYR ALA SEQRES 9 A 212 ALA LYS THR ASP GLY VAL ARG GLN VAL GLN PRO TYR ASN SEQRES 10 A 212 GLN GLY ALA LEU LEU TYR SER ILE ALA ASN GLN PRO VAL SEQRES 11 A 212 SER VAL VAL LEU GLN ALA ALA GLY LYS ASP PHE GLN LEU SEQRES 12 A 212 TYR ARG GLY GLY ILE PHE VAL GLY PRO CYS GLY ASN LYS SEQRES 13 A 212 VAL ASP HIS ALA VAL ALA ALA VAL GLY TYR GLY PRO ASN SEQRES 14 A 212 TYR ILE LEU ILE LYS ASN SER TRP GLY THR GLY TRP GLY SEQRES 15 A 212 GLU ASN GLY TYR ILE ARG ILE LYS ARG GLY THR GLY ASN SEQRES 16 A 212 SER TYR GLY VAL CYS GLY LEU TYR THR SER SER PHE TYR SEQRES 17 A 212 PRO VAL LYS ASN MODRES 9PAP OCS A 25 CYS CYSTEINESULFONIC ACID HET OCS A 25 9 HET MOH A 214 2 HET MOH A 215 2 HET MOH A 216 2 HET MOH A 217 2 HET MOH A 218 2 HET MOH A 219 2 HET MOH A 220 2 HET MOH A 221 2 HET MOH A 222 2 HET MOH A 223 2 HET MOH A 224 2 HET MOH A 225 2 HET MOH A 226 2 HET MOH A 227 2 HET MOH A 228 2 HET MOH A 229 2 HET MOH A 230 2 HET MOH A 231 2 HET MOH A 232 2 HET MOH A 233 2 HET MOH A 234 2 HET MOH A 235 2 HET MOH A 236 2 HET MOH A 237 2 HET MOH A 238 2 HET MOH A 239 2 HET MOH A 240 2 HET MOH A 241 2 HET MOH A 242 2 HETNAM OCS CYSTEINESULFONIC ACID HETNAM MOH METHANOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 MOH 29(C H4 O) FORMUL 31 HOH *195(H2 O) HELIX 1 L1 SER A 24 GLY A 43 1DISRUPTION IN THE CENTER 20 HELIX 2 L2 GLU A 50 ASP A 57 1 8 HELIX 3 L3 TYR A 67 TYR A 78 1 12 HELIX 4 R1 ASN A 117 GLN A 128 1 12 HELIX 5 R2 GLY A 138 LEU A 143 1 6 SHEET 1 S1 4 VAL A 5 TRP A 7 0 SHEET 2 S1 4 VAL A 164 GLY A 167 -1 O TYR A 166 N VAL A 5 SHEET 3 S1 4 TYR A 170 ASN A 175 -1 O LEU A 172 N VAL A 164 SHEET 4 S1 4 GLY A 185 ARG A 191 -1 O ILE A 187 N ILE A 173 SHEET 1 S2 4 ASP A 108 VAL A 113 0 SHEET 2 S2 4 SER A 206 VAL A 210 -1 O TYR A 208 N ARG A 111 SHEET 3 S2 4 VAL A 130 LEU A 134 -1 O SER A 131 N PHE A 207 SHEET 4 S2 4 ASP A 158 ALA A 163 -1 O VAL A 161 N VAL A 132 SSBOND 1 CYS A 22 CYS A 63 1555 1555 2.08 SSBOND 2 CYS A 56 CYS A 95 1555 1555 2.07 SSBOND 3 CYS A 153 CYS A 200 1555 1555 2.05 LINK C SER A 24 N OCS A 25 1555 1555 1.31 LINK C OCS A 25 N TRP A 26 1555 1555 1.28 CISPEP 1 GLY A 151 PRO A 152 0 2.09 SITE 1 ACT 2 HIS A 159 ASN A 175 SITE 1 AC1 4 TYR A 78 LYS A 106 HOH A 341 HOH A 432 SITE 1 AC2 3 LEU A 143 ARG A 145 GLY A 146 SITE 1 AC3 2 ILE A 40 ARG A 41 SITE 1 AC4 2 ALA A 126 ASN A 127 SITE 1 AC5 3 SER A 97 GLY A 101 TYR A 103 SITE 1 AC6 5 CYS A 153 GLY A 154 CYS A 200 HOH A 299 SITE 2 AC6 5 HOH A 413 SITE 1 AC7 3 SER A 124 ASN A 127 GLN A 128 SITE 1 AC8 3 OCS A 25 GLY A 65 GLY A 66 SITE 1 AC9 1 HOH A 383 SITE 1 BC1 2 ARG A 145 GLY A 194 SITE 1 BC2 3 ARG A 111 GLN A 112 HOH A 336 SITE 1 BC3 2 PRO A 68 HOH A 282 SITE 1 BC4 1 HOH A 363 SITE 1 BC5 4 ASP A 140 GLY A 151 PRO A 152 HOH A 390 SITE 1 BC6 2 PRO A 15 HOH A 379 SITE 1 BC7 3 GLY A 20 SER A 21 HOH A 414 SITE 1 BC8 1 TYR A 78 SITE 1 BC9 2 ASN A 18 GLY A 20 SITE 1 CC1 3 ARG A 188 MOH A 235 HOH A 404 SITE 1 CC2 1 ASN A 64 SITE 1 CC3 4 GLY A 147 GLU A 183 ARG A 188 MOH A 233 SITE 1 CC4 1 TYR A 208 SITE 1 CC5 6 THR A 42 ASN A 44 ASN A 46 TYR A 82 SITE 2 CC5 6 HOH A 287 HOH A 328 SITE 1 CC6 2 TYR A 82 HOH A 416 SITE 1 CC7 5 ILE A 37 ARG A 41 ASN A 127 GLN A 128 SITE 2 CC7 5 HOH A 388 SITE 1 CC8 2 TYR A 116 SER A 196 SITE 1 CC9 2 GLN A 142 HOH A 381 SITE 1 DC1 3 ARG A 59 TYR A 61 TYR A 67 CRYST1 45.200 104.640 50.880 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019654 0.00000