miRNA Analysis

miR prediction:

open in new windowTargetScan - Prediction of microRNA target
open in new windowPITA - predict microRNA-target interaction or target seqs
open in new windowPicTar an algorithm for the identification of microRNA targets
open in new windowmicroRNA.org - includes expression information
open in new windowDIANA Tools for miRNA pathway analysis
open in new windowRNAhybrid - tool for finding the minimum free energy hybridisation of a long and a short RNA
open in new windowmiRNA - Target Gene Prediction at EMBL (drosophila)
open in new windowmiRanda - the program behind microRNA.org, which can be downloaded and used with any dataset
open in new windowmiRNAMap
open in new windowMAMI - human target prediction in Harvard, with option to send results to DAVID
open in new windowmiRWalk - Database of human, mouse, rat miR-target interactions
open in new windowMicroCosm - precomputed target prediction accross many species

open in new windowDiana-mirPath pathway analysis of putative target lists of one or multiple microRNAs
open in new windowSylamer overrepresentation of sequences in expression data
open in new windowmiRGator An integrated system for functional annotation of microRNAs
open in new windowGenMir++ - combining miR and mRNA expression data
open in new windowMMIA - microRNA and mRNA Integrated Analysis
New open in new windowRNA22 predictions for Homo Sapien, Mus Musculus, Drosophila, and C. Elegans

open in new windowDIANA-Tarbase provides hundreds of thousands of high quality manually curated experimentally validated miRNA:gene interactions, enhanced with detailed meta-data
open in new windowmiRBase a searchable database of published miRNA sequences and annotation
open in new windowmiRWalk - Database of human, mouse, rat miR-target interactions for gene regulation by mammalian micro-RNAs
open in new windowmiRNAMap
open in new windowsmall RNA in plants - database of sequenced small RNAs in many plant species
open in new windowmir2disease - dtabase of miRNA disregulation in human disease