AIBS'02 Weizmann Institute of Science


Table of Contents

  Poster Abstracts
Upper Lobby
Lower Lobby
  Workshop Abstracts
 
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List of Posters

Upper Lobby

1. ConSurf: A Server for the Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information   pdf format
Glaser, F., Pupko, T., Paz, I., Bechor, D., Martz, E. and Ben-Tal, N.
Click here to view and print the Poster Award

2. Ligand-Protein Docking using Genetic Algorithms and Support Vector Machines   pdf format
Najmanovich, R., Sobolev, V. and Edelman, M.

3. Clustering of Liquid Chromatography Tandem Mass-Spectrometry Data for Peptide Analysis   pdf format
Beer, I., Barnea, E., Tamar Ziv, T. and Admon, A.

4. Sequence Bias in PDB Proteins: Comparison of Dipeptidyl Fragment Counts vs. the Residue Composition   pdf format
Felder, C., Einav, U., Segal, D. and Sussman J.

5. Rhodopsin Structure is Not an Ideal Template for Modeling G-protein Coupled Receptors: Results from Measuring Variability in Multiple Sequence Alignments   pdf format
Cherno-Schwartz, S., Rayan, A. and Goldblum, A.

6. New Scoring Function for Modelling Side Chains   pdf format
Eyal, E., Edelman, M. and Sobolev, V.

7. Predicting the (yet) Unknown: The CAPRI Challenge   pdf format
Eisenstein, M., Ben-Zeev, E., Berchanski, A., Heifetz, A. and Shapira, B.

8. Role of Hydrogen Bonds and Packing in the Assembly and Stability of Helical Membrane Proteins   pdf format
Samish, I., Wolfson, H. J. and Scherz, A.

9. A Novel Scoring Function for Predicting the Conformation of Pairs of Tightly Packed -Helices in Transmembrane Proteins   pdf format
Fleishman, S. J. and Ben-Tal, N.

10. Use of the Morphing Graphics Technique to Visualize Conformational Differences Between Aches from Different Species and Inhibitor-Induced Conformational Changes   pdf format
Zeev-Ben-Mordehai, T., Silman, I. and Sussman J.

11. Structural Genomics of ORFan Genes from Halobacterium NRC-1   pdf format
Shmuely, H., Chehanovsky, N., Dahan, I., Fischer, D., Eichler, J. and Shaanan, B.

12. Genomic ORFans - Past, Present and Future   pdf format
Siew, N. and Fischer, D.

13. A Novel Amphitropic Motif in the N-terminal Helix of Heterotrimeric G-proteins   pdf format
Elia, N., Kosloff, M. and Selinger, Z.

14. Elucidating the Mechanism of Ras GTPase using Substrate Directed Superimposition   pdf format
Kosloff, M. and Selinger, Z.

15. Structural Genomics of ORFan Genes from Halobacteriun sp. NRC-1: Homologous Expression of the Cloned Genes in Halopherax Volcanii   pdf format
Dahan, I., Chehanovsky, N., Shmuely, H., Fischer, D., Eichler, J. and Shaanan, B.

16. Rate4Site: An Algorithmic Tool for the Identification of Functional Regions in Proteins by Surface Mapping of Evolutionary Determinants Within Their Homologues   pdf format
Pupko, T., Bell, R.E., Mayrose, I., Glaser, F. and Ben-Tal, N.

17. bis-Acting Galanthamine Derivatives as Improved Drugs in the Symptomatic Treatment of Alzheimer’s Disease   pdf format
Greenblatt, H.M., Guillou, C., Badet, B., Guénard, D., Thal, C., Silman, I. and Sussman, J.

18. Crystal Structure of the Tetramerization Domain of Acetylcholinesterase at 2.3A Resolution   pdf format
Harel, M., Dvir, D., Bon, S., Liu, W.Q., Garbay, C., Sussman, J., Massoulié, J. and Silman, I.

19. Effective Discrimination of Native Protein Structures Using Atom-Atom Contacts   pdf format
McConkey, B.J., Sobolev, V. and Edelman, M.

20. Promoter Recognition by Non-Homogeneous VOMT Models   pdf format
Ben-Gal, I., Arviv, S, Shmilovici, A., and Grosse, I.

21. Minreg: Inferring and Active Regulator Set for Molecular Pathways   pdf format
Pe'er, D., Regev, A. and Tanay, A.

22. Correlated Sequence-Signatures as Markers of Protein-Protein Interaction   pdf format
Sprinzak, E. and Margalit, H.

23. Can a Minimal Gene Set for Cellular Life be Deduced from Comparisons of Completely Sequenced Bacterial Genomes?   pdf format
Dagan, T, Mintz, S. and Graur, D.

24. A Probabilistic Approach for Inferring Repression Kinetics from Expression Time-Series   pdf format
Nachman, I., Ronen, M., Zaslaver, A., Friedman, N. and Alon, U.

25. From Promoter Sequence to Expression: A Probabilistic Framework   pdf format
Segal, E., Barash, Y., Simon, I., Friedman, N. and Koller, D.
Click here to view and print the Poster Award

26. Using Structure and Sequence Information for Predicting Transcription Factor Binding Sites   pdf format
Kaplan, T., Friedman, N. and Margalit, H.

27. Tomato Phenomics Web Project   pdf format
Raskind, A., Gur, A., Sobolev, V., Zamir, D. and Edelman, M.

28. Detection of Regulatory Circuits by Integration of Protein-Protein and Protein-DNA Interaction Data   pdf format
Yeger-Lotem, E. and Margalit, H.

30. Formal Modeling, Simulation and Analysis of C. elegans Development   pdf format
Kam, N., Marelly, R., Kugler, H., Cohen, I., Harel, D., Pnueli, A., Stern, M.J. and Hubbard, E.J.A.

31. Superlink: A New Program for Exact Genetic Linkage Analysis of General Pedigrees   pdf format
Fishelson, M. and Geiger, D.

32. The Degenerate Primer Design Problem   pdf format
Linhart, C. and Shamir, R.


Lower Lobby

33. Computational Analysis of a New Methyltransferase Family and of the Destruction Box Motif   pdf format
Reichmann, D. and Pietrokovski, S.

34. In-silico Analysis of the Bacillus Anthracis Virulence Plasmid pXO   pdf format
Ariel, N., Zvi, A. and Shafferman, A.

35. Identification of Novel Small RNA Molecules in the Escherichia coli Genome: from in silico to in vivo   pdf format
Hershberg, R., Argaman, L., Vogel, J., Bejerano, G., Wagner, EGH., Altuvia, S. and Margalit, H.

36. ProLoc: Prediction of 24 Subcellular Protein Locations   pdf format
Novik, A., Hazkani-Covo, E. and Levanon, E.

37. Sentinels of Disease: A Bioinformatics and Transcriptome Approach to Elucidating Plant Resistance Genes and their Response   pdf format
Fluhr, R., Davydov, O., Hadrian, O., Kaplan-Levy, R., Rothan, B., Lund, H.H., Sagi, M., Savaldi-Goldstein, M., Ner-Gaon, H. and Zohar, Y.

38. Function to Sequence Relations of Intein Protein-Splicing Elements   pdf format
Amitai, G., Winter, E., Belenkiy, O., Caspi, Y. and Pietrokovski, S.

39. Finding Regulatory Elements from Microarray Data   pdf format
Ben-Zaken Zilberstein, C. and Geiger, D.

40. MaxD: a Combined Repository for Affimetrix and Spotted Microarray Results
Sklar, M., Noy, K. and Ophir, R.

41. MotiFinder: Improvement of the Search for Protein Functional Sites using Phylogenetic and Physicochemical Information   pdf format
Wollman, R. and Ben-Tal, N.

42. Biases and Complex Patterns in the Residues Flanking Protein N-glycosylation Sites   pdf format
Rubin, E., Ben-Dor, S. and Sharon, N.

43. Gene Expression Analysis Tools   pdf format
Brodsky, L., Kositsky, M., Leontovich, A., Kalaidzidis, Y., Safro. I., Shtutman, M., Feinstein, E.

44. Quantum Clustering of Microarray Data in a Truncated SVD Space   pdf format
Axel, I. and Horn, D.

45. Markovian Domain Signatures: Statistical Segmentation of Protein Sequences   pdf format
Bejerano, G., Seldin, Y., Margalit, H. and Tishby, N.
Click here to download (pdf format) the Poster Award

46. Analysis of a PCNA-Binding Site in Diverse Protein Families   pdf format
Marcus, S. and Pietrokovski, S.

47. The Cellular Immune System as a Gene-Prediction Resource   pdf format
Altuvia, Y., Lithwick, G. and Margalit, H.

48. Bayesian Learning of Haplotype Block Variation   pdf format
Greenspan, G. and Geiger, D.

49. Molecular Basis of Electrophysiological Diversity of Neocortical Interneurons   pdf format
Toledo-Rodriguez, M., Blumenfel, B., Wu, C.Z., Luo, J.Y., Mae, S.L., Attali, B. and Markram, H.
Click here to download (pdf format) the Poster Award

50. Glycomics Database - A Valuable Resource for Glycomics Information   pdf format
Banin, E., Neuberger, Y., Shulman, M., Gotkine, E., Halevi, A., Dukler, A. and Dotan, N.

51. Dialog between Bioinformatics, Molecular and Structural Biology, and Biochemistry illuminates the Interaction of Functional Domains in a Multi-Enzyme Complex   pdf format
Bayer, E., Barak, Y., Nakar, D., Ding, S.Y., Mechaly, A., Shimon, L., Frolow, F., Morag, E., Shay, T., Eisenstein, M., Qi, X., Lamed, R., Benhar, I. and Shoham, Y.

52. Bioinformatics Support and Training at the Weizmann Institute of Science   pdf format
Rubin, E., Ben-Dor, S., Chalifa-Caspi, V., Esterman, L., Fichman, S., Frydman, R., Ophir, R., Orr, I., Prilusky, J., Safran, M. and Kahana, C.

53. A Data-Mining Approach Applied to Life Sciences   pdf format
Marcus-Kalish, M., Bonne-Tamir, B.S., Kalid, O., Freeman, A. and Meidan, A.

54. Algorithm and Complexity for Designing Multi Route Synthesis   pdf format
Akavia, A., Aronowitz, H., Lerner, A., Senderowitz, H. and Shamir, R.

55. A New Branch and Bound Feature Selection Algorithm   pdf format
Frank, A., Geiger, D. and Yakhini, Z.

56. Finding Approximate Tandem Repeats in Genomic Sequences   pdf format
Wexler, Y., Kashi, Y. and Geiger, D.

57. Fast Implementation of e-PCR on Cray SV1 System   pdf format
Tal, J., Lapidot, M. and Safran, M.

58. Many Needles in a Haystack: Finding The Global Optimum and Best Populations in Biomolecular Systems   pdf format
Rayan, A., Glick, M., Gorelik, B., Noy, E., Brinker, G. and Goldblum, A.

59. Automating the Superparamagnetic Clustering Method   pdf format
Agrawal, H. and Domany, E.

60. GeneCards 3.0: An Object-Oriented Approach   pdf format
Safran, M., Shen-Orr, S., Solomon, I., Lapidot, M., Shmueli, O., Rosen, N., Adato, A., Ben-Dor, U., Esterman, N., Chalifa-Caspi, V. and Lancet, D.


Workshop Abstracts

Genomics & Medical Bioinformatics   pdf format
Beckmann, J.S., Chair, Yakir B., Yakhini Z. and Cohen I.

Proteomics & Bioinformatics   pdf format
Edelman, M., Chair, Sobolev V., Co-chair, Fischer D. and Frolow F.

Intellectual Property & Bioinformatics   pdf format
Gressel J., Chair and Ehrlich G.

Biology Applications for Computational & Mathematical Methods   pdf format
Domany E., Chair, Benjamini Y., Linial N., and Getz G.

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