Upper Lobby
1. ConSurf: A Server for the
Identification of Functional Regions in Proteins by Surface-Mapping of
Phylogenetic Information
2. Ligand-Protein Docking using
Genetic Algorithms and Support Vector Machines
3. Clustering of Liquid Chromatography Tandem
Mass-Spectrometry Data for Peptide Analysis
4. Sequence Bias in PDB Proteins: Comparison
of Dipeptidyl Fragment Counts vs. the Residue Composition
5. Rhodopsin Structure is Not an
Ideal Template for Modeling G-protein Coupled Receptors: Results from
Measuring Variability in Multiple Sequence Alignments
6. New Scoring Function for Modelling Side
Chains
7. Predicting the (yet) Unknown: The
CAPRI Challenge
8. Role of Hydrogen Bonds and Packing in the
Assembly and Stability of Helical Membrane Proteins
9. A Novel Scoring Function for
Predicting the Conformation of Pairs of Tightly Packed -Helices in Transmembrane Proteins
10. Use of the Morphing Graphics
Technique to Visualize Conformational Differences Between Aches from Different
Species and Inhibitor-Induced Conformational Changes
11. Structural Genomics of ORFan Genes
from Halobacterium NRC-1
12. Genomic ORFans - Past, Present and
Future
13. A Novel Amphitropic Motif in the N-terminal
Helix of Heterotrimeric G-proteins
14. Elucidating the Mechanism of
Ras GTPase using Substrate Directed Superimposition
15. Structural Genomics of ORFan Genes
from Halobacteriun sp. NRC-1: Homologous Expression of the Cloned
Genes in Halopherax Volcanii
16. Rate4Site: An Algorithmic Tool for the
Identification of Functional Regions in Proteins by Surface Mapping of Evolutionary
Determinants Within Their Homologues
17. bis-Acting Galanthamine
Derivatives as Improved Drugs in the Symptomatic Treatment of Alzheimers
Disease
18. Crystal Structure of the
Tetramerization Domain of Acetylcholinesterase at 2.3A Resolution
19. Effective Discrimination of
Native Protein Structures Using Atom-Atom Contacts
20. Promoter Recognition by Non-Homogeneous
VOMT Models
21. Minreg: Inferring and Active Regulator
Set for Molecular Pathways
22. Correlated Sequence-Signatures
as Markers of Protein-Protein Interaction
23. Can a Minimal Gene Set for Cellular
Life be Deduced from Comparisons of Completely Sequenced Bacterial Genomes?
24. A Probabilistic Approach for
Inferring Repression Kinetics from Expression Time-Series
25. From Promoter Sequence to
Expression: A Probabilistic Framework
Glaser, F., Pupko, T., Paz, I., Bechor, D., Martz, E. and Ben-Tal, N.
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the
Najmanovich, R., Sobolev, V. and Edelman, M.
Beer, I., Barnea, E., Tamar Ziv, T. and Admon, A.
Felder, C., Einav, U., Segal, D. and Sussman J.
Cherno-Schwartz, S., Rayan, A. and Goldblum, A.
Eyal, E., Edelman, M. and Sobolev, V.
Eisenstein, M., Ben-Zeev, E., Berchanski, A., Heifetz, A. and Shapira, B.
Samish, I., Wolfson, H. J. and Scherz, A.
Fleishman, S. J. and Ben-Tal, N.
Zeev-Ben-Mordehai, T., Silman, I. and Sussman J.
Shmuely, H., Chehanovsky, N., Dahan, I., Fischer, D., Eichler, J. and
Shaanan, B.
Siew, N. and Fischer, D.
Elia, N., Kosloff, M. and Selinger, Z.
Kosloff, M. and Selinger, Z.
Dahan, I., Chehanovsky, N., Shmuely, H., Fischer, D., Eichler, J. and
Shaanan, B.
Pupko, T., Bell, R.E., Mayrose, I., Glaser, F. and Ben-Tal, N.
Greenblatt, H.M., Guillou, C., Badet, B., Guénard, D., Thal, C., Silman, I. and
Sussman, J.
Harel, M., Dvir, D., Bon, S., Liu, W.Q., Garbay, C., Sussman, J., Massoulié, J. and Silman, I.
McConkey, B.J., Sobolev, V. and Edelman, M.
Ben-Gal, I., Arviv, S, Shmilovici, A., and Grosse, I.
Pe'er, D., Regev, A. and Tanay, A.
Sprinzak, E. and Margalit, H.
Dagan, T, Mintz, S. and Graur, D.
Nachman, I., Ronen, M., Zaslaver, A., Friedman, N. and Alon, U.
Segal, E., Barash, Y., Simon, I., Friedman, N. and Koller, D.
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the
26. Using Structure and Sequence Information
for Predicting Transcription Factor Binding Sites
Kaplan, T., Friedman, N. and Margalit, H.
27. Tomato Phenomics Web Project
Raskind, A., Gur, A., Sobolev, V., Zamir, D. and Edelman, M.
28. Detection of Regulatory Circuits
by Integration of Protein-Protein and Protein-DNA Interaction Data
Yeger-Lotem, E. and Margalit, H.
30. Formal Modeling, Simulation and Analysis
of C. elegans Development
Kam, N., Marelly, R., Kugler, H., Cohen, I., Harel, D., Pnueli, A., Stern, M.J. and
Hubbard, E.J.A.
31. Superlink: A New Program for
Exact Genetic Linkage Analysis of General Pedigrees
Fishelson, M. and Geiger, D.
32. The Degenerate Primer Design
Problem
Linhart, C. and Shamir, R.
Lower Lobby
33. Computational Analysis of a New
Methyltransferase Family and of the Destruction Box Motif
34. In-silico Analysis of the
Bacillus Anthracis Virulence Plasmid pXO
35. Identification of Novel Small
RNA Molecules in the Escherichia coli Genome: from in silico to
in vivo
36. ProLoc: Prediction of 24 Subcellular
Protein Locations
37. Sentinels of Disease: A
Bioinformatics and Transcriptome Approach to Elucidating Plant Resistance
Genes and their Response
38. Function to Sequence
Relations of Intein Protein-Splicing Elements
39. Finding Regulatory Elements
from Microarray Data
40.
MaxD: a Combined Repository for Affimetrix and Spotted Microarray Results
41. MotiFinder: Improvement of the
Search for Protein Functional Sites using Phylogenetic and Physicochemical
Information
42.
Biases and Complex Patterns in the Residues Flanking Protein N-glycosylation
Sites
43. Gene Expression Analysis Tools
44. Quantum Clustering of Microarray
Data in a Truncated SVD Space
45. Markovian Domain Signatures:
Statistical Segmentation of Protein Sequences
Reichmann, D. and Pietrokovski, S.
Ariel, N., Zvi, A. and Shafferman, A.
Hershberg, R., Argaman, L., Vogel, J., Bejerano, G., Wagner, EGH., Altuvia, S. and
Margalit, H.
Novik, A., Hazkani-Covo, E. and Levanon, E.
Fluhr, R., Davydov, O., Hadrian, O., Kaplan-Levy, R., Rothan, B., Lund, H.H., Sagi, M., Savaldi-Goldstein, M., Ner-Gaon, H. and Zohar, Y.
Amitai, G., Winter, E., Belenkiy, O., Caspi, Y. and Pietrokovski, S.
Ben-Zaken Zilberstein, C. and Geiger, D.
Sklar, M., Noy, K. and Ophir, R.
Wollman, R. and Ben-Tal, N.
Rubin, E., Ben-Dor, S. and Sharon, N.
Brodsky, L., Kositsky, M., Leontovich, A., Kalaidzidis, Y., Safro. I.,
Shtutman, M., Feinstein, E.
Axel, I. and Horn, D.
Bejerano, G., Seldin, Y., Margalit, H. and Tishby, N.
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46.
Analysis of a PCNA-Binding Site in Diverse Protein Families
Marcus, S. and Pietrokovski, S.
47. The Cellular Immune System as a
Gene-Prediction Resource
Altuvia, Y., Lithwick, G. and Margalit, H.
48. Bayesian Learning of Haplotype
Block Variation
Greenspan, G. and Geiger, D.
49. Molecular Basis of
Electrophysiological Diversity of Neocortical Interneurons
Toledo-Rodriguez, M., Blumenfel, B., Wu, C.Z., Luo, J.Y., Mae, S.L., Attali, B. and Markram, H.
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50. Glycomics Database - A Valuable
Resource for Glycomics Information
Banin, E., Neuberger, Y., Shulman, M., Gotkine, E., Halevi, A., Dukler, A. and Dotan, N.
51. Dialog between Bioinformatics,
Molecular and Structural Biology, and Biochemistry illuminates the
Interaction of Functional Domains in a Multi-Enzyme Complex
Bayer, E., Barak, Y., Nakar, D., Ding, S.Y., Mechaly, A., Shimon, L., Frolow, F., Morag, E.,
Shay, T., Eisenstein, M., Qi, X., Lamed, R., Benhar, I. and Shoham, Y.
52. Bioinformatics Support and Training
at the Weizmann Institute of Science
Rubin, E., Ben-Dor, S., Chalifa-Caspi, V., Esterman, L., Fichman, S., Frydman, R., Ophir, R.,
Orr, I., Prilusky, J., Safran, M. and Kahana, C.
53. A Data-Mining Approach Applied to
Life Sciences
Marcus-Kalish, M., Bonne-Tamir, B.S., Kalid, O., Freeman, A. and Meidan, A.
54. Algorithm and Complexity for Designing
Multi Route Synthesis
Akavia, A., Aronowitz, H., Lerner, A., Senderowitz, H. and Shamir, R.
55. A New Branch and Bound Feature Selection
Algorithm
Frank, A., Geiger, D. and Yakhini, Z.
56. Finding Approximate Tandem Repeats
in Genomic Sequences
Wexler, Y., Kashi, Y. and Geiger, D.
57. Fast Implementation of e-PCR on Cray
SV1 System
Tal, J., Lapidot, M. and Safran, M.
58.
Many Needles in a Haystack: Finding The Global Optimum and Best Populations in
Biomolecular Systems
Rayan, A., Glick, M., Gorelik, B., Noy, E., Brinker, G. and Goldblum, A.
59.
Automating the Superparamagnetic Clustering Method
Agrawal, H. and Domany, E.
60. GeneCards 3.0: An Object-Oriented
Approach
Safran, M., Shen-Orr, S., Solomon, I., Lapidot, M., Shmueli, O., Rosen, N., Adato, A.,
Ben-Dor, U., Esterman, N., Chalifa-Caspi, V. and Lancet, D.
Genomics & Medical Bioinformatics
Proteomics & Bioinformatics
Intellectual Property & Bioinformatics
Biology Applications for Computational
& Mathematical Methods
Beckmann, J.S., Chair, Yakir B., Yakhini Z. and Cohen I.
Edelman, M., Chair, Sobolev V., Co-chair, Fischer D. and Frolow F.
Gressel J., Chair and Ehrlich G.
Domany E., Chair, Benjamini Y., Linial N., and Getz G.