Contacts of the helix formed by residues 201 - 299 (chain A) in PDB entry 2MSD
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 201 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A LYS* 1.3 69.7 + - - +
203A LEU 3.5 2.0 - - - +
204A LEU* 3.7 35.1 - - + +
205A ASP* 3.0 27.4 + - + +
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Residues in contact with LYS 202 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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58A PCW 4.7 25.4 - - + -
201A LEU* 1.3 79.3 - - - +
203A LEU* 1.3 78.2 + - + +
205A ASP* 4.2 0.9 - - - +
206A ASN* 2.7 60.9 + - - +
569C LEU* 4.1 13.7 - - - +
573C LEU* 5.9 4.6 - - - +
576C VAL* 6.1 5.2 - - + -
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Residues in contact with LEU 203 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A PCW 4.0 32.5 - - + -
201A LEU 3.5 0.2 - - - -
202A LYS* 1.3 91.7 - - + +
204A LEU* 1.3 58.2 + - + +
206A ASN* 3.9 6.9 - - + +
207A TRP* 2.8 32.6 + - - +
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Residues in contact with LEU 204 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A LEU* 3.7 41.9 - - + +
202A LYS 3.2 1.0 - - - -
203A LEU* 1.3 79.7 - - + +
205A ASP* 1.3 62.4 + - - +
207A TRP* 3.4 16.9 + - + +
208A ASP* 3.4 17.3 + - - +
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Residues in contact with ASP 205 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A LEU* 3.0 17.4 + - + +
202A LYS* 4.3 1.8 - - - +
204A LEU* 1.3 74.1 - - - +
206A ASN* 1.3 75.0 + - - +
208A ASP* 3.0 26.8 + - - +
209A SER* 3.4 11.8 + - - -
568C ASP* 4.1 28.1 - - - +
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Residues in contact with ASN 206 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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202A LYS* 2.7 55.1 + - - +
203A LEU* 3.9 9.9 - - + +
205A ASP* 1.3 87.0 + - - +
207A TRP* 1.3 62.4 + - - +
209A SER* 3.2 19.5 + - - -
210A VAL* 3.3 17.7 + - + +
568C ASP* 6.1 2.6 - - - +
569C LEU* 4.1 18.4 - - - +
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Residues in contact with TRP 207 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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203A LEU 2.8 19.7 + - - +
204A LEU* 3.6 16.2 - - + +
205A ASP 3.2 0.2 - - - -
206A ASN* 1.3 74.4 - - - +
208A ASP* 1.3 54.3 + - - +
210A VAL* 3.1 19.6 + - + +
211A THR* 2.7 62.4 + - + -
214A PHE* 6.2 2.2 - - - -
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Residues in contact with ASP 208 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A LEU 3.4 7.3 + - - +
205A ASP* 3.0 22.2 + - - +
207A TRP* 1.3 81.6 - - - +
209A SER* 1.3 52.5 + - - +
211A THR* 3.6 9.0 - - - +
212A SER* 2.7 39.9 + - - -
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Residues in contact with SER 209 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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205A ASP* 3.5 15.6 + - - -
206A ASN* 3.2 12.8 + - - -
208A ASP* 1.3 80.6 + - - +
210A VAL* 1.3 59.3 + - - +
212A SER* 3.0 14.6 + - - -
213A THR* 2.8 23.0 + - - -
561C LYS* 3.9 15.2 - - - +
565C ALA* 5.3 12.5 - - - +
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Residues in contact with VAL 210 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A PCW 4.5 17.5 - - + -
206A ASN* 3.3 16.4 - - + +
207A TRP* 3.1 21.2 + - + +
209A SER* 1.3 76.8 - - - +
211A THR* 1.3 59.1 + - - +
213A THR* 3.1 7.9 + - - -
214A PHE* 2.9 50.0 + - + -
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Residues in contact with THR 211 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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207A TRP* 2.7 57.4 + - + +
208A ASP* 3.6 10.5 - - - +
210A VAL* 1.3 73.9 - - - +
212A SER* 1.3 57.1 + - - +
214A PHE* 3.0 13.0 + - + +
215A SER* 2.9 36.1 + - - +
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Residues in contact with SER 212 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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208A ASP* 2.7 24.2 + - - -
209A SER* 3.0 17.7 + - - -
211A THR* 1.3 75.5 - - - +
213A THR* 1.3 55.7 + - - +
215A SER* 3.2 8.5 + - - -
216A LYS* 2.8 37.7 + - - +
561C LYS* 4.1 17.0 - - - +
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Residues in contact with THR 213 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 4.6 11.4 - - + -
48A PCW 4.5 13.9 - - + -
209A SER 2.8 17.6 + - - -
210A VAL* 3.1 12.4 + - - -
212A SER* 1.3 78.5 - - - +
214A PHE* 1.3 53.0 + - - +
216A LYS* 3.3 7.8 + - + +
217A LEU* 2.8 58.6 + - + +
554C HIS* 5.8 3.6 - - + -
558C LEU* 6.3 2.7 - - + -
561C LYS* 3.4 19.9 - - - +
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Residues in contact with PHE 214 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 4.2 50.3 - - + -
48A PCW 4.2 19.5 - - + -
207A TRP* 6.2 2.5 - - - -
210A VAL* 2.9 40.3 + - + -
211A THR* 3.4 12.1 - - + +
213A THR* 1.3 76.0 - - - +
215A SER* 1.3 53.5 + - - +
217A LEU* 3.3 12.2 + - + +
218A ARG* 2.7 53.5 + - + +
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Residues in contact with SER 215 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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211A THR* 2.9 19.3 + - - +
212A SER* 3.4 12.3 - - - -
214A PHE* 1.3 76.9 - - - +
216A LYS* 1.3 57.1 + - - +
218A ARG* 3.2 8.7 + - - +
219A GLU* 2.9 39.7 + - - +
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Residues in contact with LYS 216 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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212A SER* 2.8 21.6 + - - +
213A THR* 3.6 6.7 - - + +
215A SER* 1.3 74.7 - - - +
217A LEU* 1.3 64.7 + - + +
219A GLU* 3.4 16.3 + - - +
220A GLN* 3.1 22.2 + - - +
557C THR* 3.5 29.9 - - + +
560C GLU* 2.7 38.7 + - - -
561C LYS* 3.9 13.9 - - - +
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Residues in contact with LEU 217 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 3.9 45.8 - - + -
48A PCW 4.9 2.0 - - + -
213A THR* 2.8 38.4 + - + +
214A PHE* 3.6 14.6 - - + +
216A LYS* 1.3 75.8 - - + +
218A ARG* 1.3 53.1 + - + +
220A GLN* 3.0 9.4 + - + +
221A LEU* 2.6 51.4 + - + +
554C HIS* 4.3 26.5 - - + +
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Residues in contact with ARG 218 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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214A PHE* 2.7 35.9 + - + +
215A SER* 3.2 8.3 + - - +
217A LEU* 1.3 73.9 - - + +
219A GLU* 1.3 62.1 + - + +
220A GLN 3.4 0.3 + - - -
221A LEU* 3.4 25.4 + - + +
222A GLY* 3.4 9.9 + - - -
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Residues in contact with GLU 219 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215A SER* 2.9 23.8 + - - +
216A LYS* 3.8 18.2 - - - +
218A ARG* 1.3 76.8 - - + +
220A GLN* 1.3 58.7 + - - +
222A GLY* 4.6 0.2 - - - -
223A PRO* 3.0 22.2 - - - +
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Residues in contact with GLN 220 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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216A LYS 3.1 13.2 + - - +
217A LEU* 3.0 15.1 + - + +
219A GLU* 1.3 76.5 - - - +
221A LEU* 1.3 58.8 + - - +
222A GLY 3.1 2.2 - - - -
223A PRO* 3.1 14.4 - - - +
224A VAL* 2.9 34.9 + - + +
550C LYS* 3.0 44.2 + - + +
553C GLU* 2.8 40.4 + - + +
554C HIS* 6.0 3.6 - - + +
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Residues in contact with LEU 221 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 5.5 11.9 - - + -
217A LEU* 2.6 36.5 + - + +
218A ARG* 3.4 23.3 + - + +
220A GLN* 1.3 74.0 - - - +
222A GLY* 1.3 50.1 + - - +
224A VAL* 3.4 17.3 - - + +
225A THR* 2.7 45.3 + - + +
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Residues in contact with GLY 222 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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218A ARG 3.4 10.3 + - - -
219A GLU 4.6 0.2 - - - -
220A GLN 3.1 1.4 - - - -
221A LEU* 1.3 77.1 - - - +
223A PRO* 1.3 63.2 - - - +
225A THR* 2.8 21.0 + - - -
226A GLN* 2.9 30.7 + - - +
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Residues in contact with PRO 223 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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219A GLU 3.0 25.1 - - - +
220A GLN* 3.1 24.0 - - - +
222A GLY* 1.3 81.6 - - - +
224A VAL* 1.3 53.6 + - - +
226A GLN* 3.7 19.3 - - - +
227A GLU* 2.7 52.7 + - + +
550C LYS* 4.5 1.8 - - - +
553C GLU* 5.9 0.7 - - - +
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Residues in contact with VAL 224 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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220A GLN* 2.9 31.4 + - + +
221A LEU* 3.4 22.0 - - + +
223A PRO* 1.3 75.8 - - - +
225A THR* 1.3 62.5 + - + +
227A GLU* 4.0 2.7 - - - +
228A PHE* 2.8 52.8 + - + +
550C LYS* 3.4 35.2 - - + -
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Residues in contact with THR 225 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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221A LEU* 2.7 30.9 + - + +
222A GLY* 2.8 13.5 + - - -
224A VAL* 1.3 74.9 - - + +
226A GLN* 1.3 56.0 + - - +
228A PHE* 4.2 4.9 - - + -
229A TRP* 2.7 66.0 + - + +
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Residues in contact with GLN 226 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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222A GLY* 2.9 34.0 + - - +
223A PRO* 3.4 17.7 - - - +
225A THR* 1.3 76.8 - - - +
227A GLU* 1.3 60.4 + - + +
229A TRP* 3.8 4.9 - - - +
230A ASP* 2.9 27.9 + - - +
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Residues in contact with GLU 227 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
223A PRO* 2.7 29.5 + - + +
224A VAL* 4.1 2.5 - - - +
226A GLN* 1.3 74.1 - - + +
228A PHE* 1.3 59.9 + - + +
230A ASP* 3.2 9.5 + - - +
231A ASN* 2.8 30.8 + - - +
546C GLU* 3.5 38.8 - - + +
550C LYS* 3.3 32.4 + - - +
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Residues in contact with PHE 228 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 6.2 2.2 - - + -
224A VAL* 2.8 38.5 + - + +
225A THR* 3.9 4.0 - - + +
227A GLU* 1.3 77.3 - - + +
229A TRP* 1.3 70.8 + + + +
231A ASN* 3.3 4.7 + - - +
232A LEU* 2.8 40.6 + - + +
543C ARG* 3.6 37.0 - - + -
546C GLU* 5.2 6.7 - - + -
547C TYR* 3.6 41.1 - + - -
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Residues in contact with TRP 229 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 4.9 16.2 - - + -
225A THR* 2.7 45.2 + - + +
226A GLN* 3.8 4.9 - - - +
228A PHE* 1.3 85.5 - + + +
230A ASP* 1.3 56.8 + - - +
232A LEU* 3.2 28.5 + - + +
233A GLU* 2.7 43.0 + - + +
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Residues in contact with ASP 230 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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226A GLN 2.9 18.8 + - - +
227A GLU* 3.4 10.0 - - - +
229A TRP* 1.3 77.1 - - - +
231A ASN* 1.3 62.4 + - - +
233A GLU* 3.3 10.1 + - - +
234A LYS* 3.1 55.1 + - - +
546C GLU* 4.6 4.5 - - - +
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Residues in contact with ASN 231 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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227A GLU 2.8 10.3 + - - +
228A PHE* 3.8 5.2 - - - +
230A ASP* 1.3 73.4 - - - +
232A LEU* 1.3 59.3 + - - +
234A LYS* 2.8 29.8 + - - +
235A GLU* 3.0 22.2 + - - +
539C ASN* 3.2 42.6 + - + +
542C ALA* 3.6 5.0 - - - +
543C ARG* 3.5 28.6 - - - +
546C GLU* 2.8 40.3 + - - -
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Residues in contact with LEU 232 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A PCW 3.9 22.9 - - + -
228A PHE* 2.8 20.6 + - + +
229A TRP* 3.5 37.9 - - + +
231A ASN* 1.3 74.0 - - - +
233A GLU* 1.3 54.1 + - - +
235A GLU* 3.2 23.6 + - + +
236A THR* 2.7 49.5 + - + +
543C ARG* 4.0 8.3 - - - +
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Residues in contact with GLU 233 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229A TRP* 2.7 24.0 + - + +
230A ASP* 3.4 12.8 - - - +
231A ASN 3.2 0.2 - - - -
232A LEU* 1.3 77.3 - - - +
234A LYS* 1.3 53.4 + - + +
236A THR* 3.1 4.5 + - - -
237A GLU* 2.7 43.5 + - - +
240A ARG* 3.7 20.6 + - - -
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Residues in contact with LYS 234 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
230A ASP* 3.1 41.9 + - - +
231A ASN* 2.8 26.0 + - - +
233A GLU* 1.3 76.0 - - + +
235A GLU* 1.3 54.1 + - - +
237A GLU* 3.5 9.6 - - - +
238A GLY* 2.8 31.4 + - - -
535C ALA* 4.9 4.5 - - + +
538C GLU* 5.6 6.8 - - + +
539C ASN* 3.2 26.6 + - - +
542C ALA* 4.3 11.1 - - - +
546C GLU* 5.2 0.2 + - - -
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Residues in contact with GLU 235 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231A ASN 3.0 6.6 + - - +
232A LEU* 3.3 24.4 - - + +
234A LYS* 1.3 78.7 - - - +
236A THR* 1.3 58.5 + - + +
238A GLY* 3.3 1.2 + - - -
239A LEU* 2.8 42.4 + - + +
535C ALA* 5.0 7.9 - - + +
536C LEU* 3.6 26.4 - - + +
539C ASN* 2.7 23.3 + - - +
543C ARG* 2.6 48.5 + - - -
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Residues in contact with THR 236 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A PCW 5.1 15.9 - - + -
232A LEU* 2.7 37.6 + - + +
233A GLU* 3.1 16.8 + - - -
235A GLU* 1.3 72.3 - - + +
237A GLU* 1.3 54.8 + - - +
239A LEU* 3.5 14.7 - - + +
240A ARG* 2.7 67.1 + - - +
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Residues in contact with GLU 237 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233A GLU* 2.7 30.0 + - - +
234A LYS* 3.5 9.8 - - - +
236A THR* 1.3 70.9 + - - +
238A GLY* 1.3 66.6 + - - +
240A ARG* 3.0 18.3 + - + +
241A GLN* 2.9 42.0 + - - +
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Residues in contact with GLY 238 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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234A LYS 2.8 16.9 + - - -
235A GLU 3.7 1.3 - - - -
237A GLU* 1.3 76.5 - - - +
239A LEU* 1.3 49.4 + - - +
241A GLN* 3.0 20.6 + - - +
242A GLU* 2.7 45.6 + - - +
535C ALA* 5.2 9.9 - - - -
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Residues in contact with LEU 239 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A PCW 4.0 37.9 - - + -
235A GLU* 2.8 35.6 + - + +
236A THR* 3.6 12.6 - - + +
238A GLY* 1.3 75.7 - - - +
240A ARG* 1.3 52.0 + - - +
242A GLU* 3.6 19.5 - - - +
243A MET* 2.7 38.7 + - + +
532C ARG* 3.8 31.0 - - + +
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Residues in contact with ARG 240 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A GLU* 3.7 14.8 + - - -
236A THR* 2.7 57.2 + - - +
237A GLU* 3.0 14.6 + - - +
239A LEU* 1.3 74.8 - - - +
241A GLN* 1.3 63.7 + - + +
243A MET* 3.2 17.9 + - + +
244A SER* 2.8 28.1 + - - -
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Residues in contact with GLN 241 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
237A GLU* 2.9 41.5 + - - +
238A GLY* 3.4 17.0 + - - +
240A ARG* 1.3 76.1 - - + +
242A GLU* 1.3 63.2 + - + +
244A SER* 3.2 20.8 + - - -
245A LYS* 3.4 24.3 - - - +
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Residues in contact with GLU 242 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238A GLY* 2.7 21.8 + - - +
239A LEU* 3.6 15.3 - - + +
241A GLN* 1.3 74.7 - - + +
243A MET* 1.3 52.3 + - - +
244A SER 3.0 1.6 - - - -
245A LYS* 2.8 15.4 + - + +
246A ASP* 2.5 38.5 + - - +
528C ARG* 2.7 33.2 - - + +
531C ALA* 4.0 12.5 - - + -
532C ARG* 2.6 66.6 + - - +
535C ALA* 5.6 0.9 - - - +
----------------------------------------------------------
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Residues in contact with MET 243 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A PCW 6.3 4.9 - - + -
239A LEU* 2.7 28.9 + - + +
240A ARG* 3.2 20.4 + - + +
242A GLU* 1.3 73.6 - - - +
244A SER* 1.3 57.8 + - - +
245A LYS 3.1 4.3 + - - -
246A ASP* 4.3 8.1 - - - -
247A LEU* 3.3 47.5 + - + +
248A GLU* 3.7 2.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 244 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240A ARG 2.8 15.7 + - - -
241A GLN* 3.3 12.3 - - - -
242A GLU 3.0 0.6 - - - -
243A MET* 1.3 75.9 - - - +
245A LYS* 1.3 63.4 + - - +
248A GLU* 3.2 26.8 - - - +
----------------------------------------------------------
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Residues in contact with LYS 245 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241A GLN* 3.4 25.1 - - - +
242A GLU* 2.8 14.8 + - + +
243A MET 3.0 0.4 - - - -
244A SER* 1.3 82.9 - - - +
246A ASP* 1.3 59.5 + - - +
247A LEU 3.5 0.9 - - - -
248A GLU* 3.7 3.8 - - - -
249A GLU* 2.7 52.2 + - - +
527C GLN 6.5 0.2 - - - -
528C ARG* 4.2 18.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP 246 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A PCW 3.7 20.5 - - + +
242A GLU* 2.5 18.9 + - - +
243A MET* 4.3 4.9 - - - -
245A LYS* 1.3 72.9 - - - +
247A LEU* 1.3 62.1 + - + +
250A VAL* 2.9 32.8 + - - +
521C TYR* 3.7 1.2 + - - -
525C LEU* 4.1 6.9 - - - +
528C ARG* 2.6 40.9 + - - +
532C ARG* 2.6 37.2 + - - -
----------------------------------------------------------
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Residues in contact with LEU 247 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A PCW 4.1 25.8 - - + -
243A MET* 3.3 40.6 + - + +
246A ASP* 1.3 80.3 - - + +
248A GLU* 1.3 59.6 + - - +
250A VAL* 3.3 10.6 - - + +
251A LYS* 2.9 45.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 248 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243A MET 3.7 1.4 + - - +
244A SER* 3.2 39.0 - - - +
245A LYS* 3.4 2.6 + - - +
246A ASP 3.3 0.6 - - - -
247A LEU* 1.3 79.7 - - + +
249A GLU* 1.3 60.4 + - + +
251A LYS* 3.7 10.1 - - - +
252A ALA* 2.9 29.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 249 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
245A LYS* 2.7 36.2 + - - +
248A GLU* 1.3 73.0 - - + +
250A VAL* 1.3 58.1 + - - +
252A ALA* 3.7 6.2 - - - -
253A LYS* 2.8 38.5 + - + +
521C TYR* 5.2 0.4 - - - -
524C GLU* 3.5 30.8 - - - +
527C GLN* 4.7 10.3 + - - -
528C ARG* 2.6 36.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 250 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A PCW 4.2 16.8 - - + -
246A ASP 2.9 19.9 + - - +
247A LEU* 3.3 31.0 - - + +
249A GLU* 1.3 77.0 - - - +
251A LYS* 1.3 61.3 + - + +
253A LYS* 3.7 2.8 - - + +
254A VAL* 2.7 38.7 + - + +
257A TYR* 6.1 5.4 - - + -
521C TYR* 3.4 32.8 - - + +
528C ARG* 4.6 0.8 - - - +
----------------------------------------------------------
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Residues in contact with LYS 251 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
247A LEU* 2.9 32.3 + - + +
248A GLU* 3.7 10.5 - - - +
250A VAL* 1.3 80.1 - - + +
252A ALA* 1.3 63.1 - - - +
253A LYS 3.1 1.8 - - - -
254A VAL* 3.2 27.7 + - + +
255A GLN* 3.5 12.8 - - - +
----------------------------------------------------------
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Residues in contact with ALA 252 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
248A GLU 2.9 17.7 + - - +
249A GLU* 3.8 7.9 - - - +
251A LYS* 1.3 76.7 - - - +
253A LYS* 1.3 61.8 + - + +
255A GLN* 4.0 14.9 - - - +
256A PRO* 3.2 18.2 - - - +
----------------------------------------------------------
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Residues in contact with LYS 253 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249A GLU* 2.8 21.0 + - - +
250A VAL* 4.3 3.4 - - - +
252A ALA* 1.3 79.2 - - + +
254A VAL* 1.3 57.3 + - - +
255A GLN 3.0 2.9 - - - -
256A PRO* 3.1 9.7 - - + +
257A TYR* 2.8 72.2 + - + +
516C THR 5.4 0.2 + - - -
520C PRO* 3.6 25.1 - - - +
521C TYR* 4.8 5.2 - - + -
524C GLU* 2.7 43.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL 254 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250A VAL* 2.7 22.6 + - + +
251A LYS* 3.2 25.6 - - + +
253A LYS* 1.3 78.7 - - - +
255A GLN* 1.3 64.2 + - + +
257A TYR* 4.1 7.4 - - + -
258A LEU* 2.8 59.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 255 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251A LYS 3.5 17.9 - - - +
252A ALA* 4.0 14.4 + - - +
253A LYS 3.0 0.2 - - - -
254A VAL* 1.3 82.2 - - + +
256A PRO* 1.4 58.0 - - + +
258A LEU* 3.9 1.4 - - - +
259A ASP* 2.8 40.0 + - - +
----------------------------------------------------------
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Residues in contact with PRO 256 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
252A ALA 3.2 12.1 - - - +
253A LYS* 3.1 28.0 - - + +
255A GLN* 1.4 93.3 - - + +
257A TYR* 1.3 61.6 + - + -
259A ASP* 3.9 6.2 - - + +
260A ASP* 2.9 30.8 + - - +
517C HIS* 4.3 3.7 + - - +
----------------------------------------------------------
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Residues in contact with TYR 257 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250A VAL* 5.8 5.4 - - + -
253A LYS* 2.8 68.7 + - + +
254A VAL* 3.8 7.6 - - + +
256A PRO* 1.3 82.3 - - + +
258A LEU* 1.3 63.7 + - + +
260A ASP* 3.3 2.8 + - - +
261A PHE* 3.0 37.7 + + + -
516C THR 4.0 3.9 + - - -
517C HIS* 2.8 72.5 + + + +
521C TYR* 3.9 13.3 + + + +
----------------------------------------------------------
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Residues in contact with LEU 258 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
254A VAL* 2.8 47.0 + - + +
255A GLN* 4.1 1.8 - - - +
257A TYR* 1.3 73.2 - - + +
259A ASP* 1.3 54.3 + - - +
261A PHE* 3.3 11.4 + - + +
262A GLN* 2.6 41.4 + - + +
----------------------------------------------------------
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Residues in contact with ASP 259 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
255A GLN 2.8 24.9 + - - +
256A PRO* 4.1 5.3 - - + +
258A LEU* 1.3 73.5 - - - +
260A ASP* 1.3 57.9 + - - +
262A GLN* 3.7 20.2 + - - +
263A LYS* 2.7 65.6 + - - +
----------------------------------------------------------
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Residues in contact with ASP 260 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
256A PRO 2.9 21.3 + - - +
257A TYR 3.5 4.0 - - - +
258A LEU 3.2 0.2 - - - -
259A ASP* 1.3 74.8 + - - +
261A PHE* 1.3 63.8 + - - +
263A LYS* 3.6 10.8 + - - +
264A LYS* 2.7 69.4 + - - +
513C ALA* 3.2 15.1 - - - +
517C HIS* 3.8 16.5 + - + +
----------------------------------------------------------
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Residues in contact with PHE 261 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
257A TYR* 3.0 28.8 + + + +
258A LEU* 3.9 13.2 - - + +
260A ASP* 1.3 83.4 - - - +
262A GLN* 1.3 53.1 + - - +
264A LYS* 3.7 3.6 - - + +
265A TRP* 2.7 47.8 + - + +
510C HIS* 3.6 43.7 - + + -
513C ALA* 4.4 7.2 - - + -
514C LEU* 3.7 28.7 - - + -
517C HIS* 3.8 21.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN 262 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
258A LEU* 2.6 22.0 + - + +
259A ASP* 3.7 25.6 + - - +
261A PHE* 1.3 71.2 - - - +
263A LYS* 1.3 54.8 + - - +
265A TRP* 3.1 6.8 + - + +
266A GLN* 2.7 59.1 + - + +
----------------------------------------------------------
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Residues in contact with LYS 263 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259A ASP* 2.7 50.5 + - - +
260A ASP* 3.6 9.6 + - - +
261A PHE 3.4 0.2 - - - -
262A GLN* 1.3 75.9 - - - +
264A LYS* 1.3 60.1 + - + +
266A GLN* 3.2 14.8 + - - +
267A GLU* 3.0 40.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 264 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
260A ASP* 2.7 54.8 + - - +
261A PHE* 3.9 4.9 - - + +
263A LYS* 1.3 76.6 - - + +
265A TRP* 1.3 54.5 + - - +
267A GLU* 3.2 20.0 + - - +
268A GLU* 2.7 41.6 + - + +
509C ALA* 2.8 49.6 + - + +
510C HIS* 4.0 18.8 - - + +
513C ALA* 3.6 5.1 - - - +
----------------------------------------------------------
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Residues in contact with TRP 265 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A PCW 6.1 9.6 - - + -
261A PHE* 2.7 30.5 + - + +
262A GLN* 3.1 8.9 + - + +
264A LYS* 1.3 73.8 - - - +
266A GLN* 1.3 52.9 + - + +
268A GLU* 3.3 15.3 + - + +
269A MET* 2.7 78.9 + - + +
272A TYR* 6.5 0.4 - + - -
510C HIS* 4.1 20.5 - + - -
----------------------------------------------------------
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Residues in contact with GLN 266 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
262A GLN* 2.7 42.3 + - + +
263A LYS* 3.4 13.3 - - - +
265A TRP* 1.3 74.7 - - + +
267A GLU* 1.3 55.5 + - + +
269A MET* 3.2 8.0 + - - +
270A GLU* 2.8 47.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 267 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263A LYS* 3.0 29.8 + - + +
264A LYS* 3.4 23.9 - - - +
266A GLN* 1.3 78.1 - - + +
268A GLU* 1.3 53.1 + - + +
270A GLU* 3.2 10.7 + - - +
271A LEU* 2.7 49.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 268 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A LYS* 2.7 27.4 + - + +
265A TRP* 3.4 19.3 + - + +
266A GLN 3.2 0.2 - - - -
267A GLU* 1.3 74.0 - - + +
269A MET* 1.3 52.1 + - + +
271A LEU* 4.4 2.7 - - + -
272A TYR* 2.8 39.1 + - + +
503C MET* 4.8 4.2 - - - +
506C ARG* 2.7 67.4 + - + +
510C HIS* 2.6 35.6 + - + -
----------------------------------------------------------
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Residues in contact with MET 269 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A TRP* 2.7 59.1 + - + +
266A GLN* 3.5 7.4 - - - +
268A GLU* 1.3 70.4 - - - +
270A GLU* 1.3 56.6 + - + +
272A TYR* 3.3 13.8 + - - +
273A ARG* 2.8 79.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 270 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A GLN* 2.8 31.4 + - + +
267A GLU* 3.5 9.1 - - - +
269A MET* 1.3 73.4 - - + +
271A LEU* 1.3 54.0 + - + +
273A ARG* 3.1 13.2 + - - +
274A GLN* 2.7 47.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 271 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267A GLU* 2.7 40.5 + - + +
268A GLU* 3.7 8.1 - - + +
270A GLU* 1.3 73.5 - - + +
272A TYR* 1.3 57.3 + - - +
274A GLN* 3.3 9.3 + - + +
275A LYS* 2.9 44.9 + - - +
502C GLU* 3.2 46.0 - - + +
506C ARG* 4.4 6.1 - - + +
----------------------------------------------------------
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Residues in contact with TYR 272 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A TRP* 6.5 0.7 - + - -
268A GLU* 2.8 26.2 + - + +
269A MET* 3.5 16.6 - - - +
271A LEU* 1.3 73.6 - - - +
273A ARG* 1.3 52.5 + - + +
275A LYS* 3.3 3.4 + - + +
276A VAL* 2.6 38.8 + - + +
499C LEU* 4.5 21.8 - - + -
503C MET* 3.5 23.2 - - + +
506C ARG* 3.5 29.6 - - - -
----------------------------------------------------------
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Residues in contact with ARG 273 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269A MET* 2.8 60.7 + - + +
270A GLU* 3.6 11.3 - - - +
272A TYR* 1.3 69.9 - - + +
274A GLN* 1.3 65.4 + - + +
275A LYS 3.1 1.9 + - - -
276A VAL* 3.3 15.2 - - + +
277A GLU* 3.3 28.7 + - + +
----------------------------------------------------------
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Residues in contact with GLN 274 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270A GLU* 2.7 35.8 + - + +
271A LEU* 3.3 13.1 + - + +
273A ARG* 1.3 72.5 - - + +
275A LYS* 1.3 64.0 + - + +
277A GLU* 5.2 6.2 + - - +
278A PRO* 3.1 22.2 - - - +
----------------------------------------------------------
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Residues in contact with LYS 275 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271A LEU* 2.9 34.4 + - - +
272A TYR* 3.7 4.0 - - + +
274A GLN* 1.3 83.8 - - + +
276A VAL* 1.3 56.5 + - - +
277A GLU 3.1 3.2 + - - -
278A PRO* 3.1 6.7 - - + +
279A LEU* 2.8 55.8 + - + +
498C PRO* 5.0 15.2 - - + +
499C LEU* 3.8 30.5 - - + -
502C GLU* 2.6 26.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 276 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A PCW 6.1 8.5 - - + -
272A TYR* 2.6 17.4 + - + +
273A ARG* 3.3 28.5 - - + +
275A LYS* 1.3 73.8 - - - +
277A GLU* 1.3 64.3 + - + +
279A LEU* 4.3 7.6 - - + +
280A ARG* 2.8 53.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 277 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A ARG* 3.3 18.4 + - + +
274A GLN* 5.2 5.5 + - - +
275A LYS 3.1 0.8 - - - -
276A VAL* 1.3 82.8 - - + +
278A PRO* 1.4 65.0 - - + +
280A ARG* 3.6 4.5 - - - +
281A ALA* 2.9 27.8 + - - +
----------------------------------------------------------
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Residues in contact with PRO 278 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274A GLN 3.1 24.9 - - - +
275A LYS* 3.1 20.4 - - + +
277A GLU* 1.4 89.6 - - + +
279A LEU* 1.3 57.6 + - + +
281A ALA* 3.1 9.4 + - + +
282A GLU* 2.8 41.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 279 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275A LYS* 2.8 45.3 + - + +
276A VAL* 4.0 6.5 - - + +
278A PRO* 1.3 76.9 - - + +
280A ARG* 1.3 55.5 + - - +
282A GLU* 3.3 26.2 + - - +
283A LEU* 2.8 38.8 + - + +
494C GLU 5.2 3.4 - - - +
495C LYS* 3.5 32.8 - - + -
499C LEU* 3.7 29.8 - - + -
----------------------------------------------------------
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Residues in contact with ARG 280 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A PCW 5.5 9.9 - - - +
276A VAL* 2.8 37.4 + - + +
277A GLU* 3.6 5.4 - - - +
279A LEU* 1.3 73.6 - - - +
281A ALA* 1.3 56.3 + - - +
283A LEU* 3.6 11.7 - - + +
284A GLN* 2.7 43.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 281 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A GLU 2.9 13.9 + - - +
278A PRO* 3.3 13.9 - - + +
280A ARG* 1.3 78.4 - - - +
282A GLU* 1.3 57.6 + - + +
284A GLN* 3.3 13.2 + - - +
285A GLU* 2.9 41.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 282 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278A PRO* 2.8 24.3 + - + +
279A LEU* 3.4 19.1 - - - +
281A ALA* 1.3 75.2 - - + +
283A LEU* 1.3 53.8 + - - +
285A GLU* 3.3 8.5 + - - +
286A GLY* 2.8 33.8 + - - -
491C GLU* 4.9 14.5 - - + -
494C GLU* 5.7 6.5 - - - +
495C LYS* 2.6 36.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 283 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3A PCW 5.7 11.4 - - + -
279A LEU* 2.8 30.0 + - + +
280A ARG* 3.6 9.6 - - + +
282A GLU* 1.3 76.3 - - - +
284A GLN* 1.3 52.0 + - - +
286A GLY* 3.6 0.6 - - - -
287A ALA* 2.7 37.2 + - - +
290A LYS* 5.5 1.9 + - - +
488C LYS* 5.5 10.8 - - + -
491C GLU* 3.7 22.7 - - + +
492C LEU* 6.2 2.7 - - + -
495C LYS* 4.6 19.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 284 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280A ARG* 2.7 26.9 + - + +
281A ALA* 3.6 12.5 + - - +
283A LEU* 1.3 70.7 - - - +
285A GLU* 1.3 61.6 + - - +
287A ALA* 3.2 7.0 + - + +
288A ARG* 2.8 71.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 285 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281A ALA* 2.9 26.5 + - - +
282A GLU* 3.6 6.8 - - - +
284A GLN* 1.3 75.8 - - - +
286A GLY* 1.3 64.7 + - - +
288A ARG* 3.2 23.0 + - - +
289A GLN* 2.9 24.0 + - - +
----------------------------------------------------------
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Residues in contact with GLY 286 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282A GLU 2.8 20.3 + - - -
283A LEU 3.6 1.3 - - - -
285A GLU* 1.3 74.6 - - - +
287A ALA* 1.3 51.0 + - - +
289A GLN* 3.2 7.9 + - - +
290A LYS* 2.7 62.1 + - - +
487C GLN* 5.7 3.4 - - - -
491C GLU* 4.5 4.5 - - - -
----------------------------------------------------------
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Residues in contact with ALA 287 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283A LEU 2.7 23.4 + - - +
284A GLN* 3.5 7.9 - - - +
286A GLY* 1.3 73.4 - - - +
288A ARG* 1.3 53.6 + - + +
290A LYS* 4.4 7.1 - - - +
291A LEU* 2.6 53.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 288 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284A GLN* 2.8 59.1 + - + +
285A GLU* 3.5 20.9 - - - +
287A ALA* 1.3 75.6 - - + +
289A GLN* 1.3 57.5 + - - +
291A LEU* 4.0 5.3 - - - +
292A HIS* 2.8 46.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 289 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285A GLU 2.9 13.2 + - - +
286A GLY* 3.5 11.6 - - - +
288A ARG* 1.3 76.7 - - - +
290A LYS* 1.3 64.0 + - - +
292A HIS* 3.2 5.4 + - - +
293A GLU* 2.7 61.9 + - - +
483C GLU* 6.1 3.6 - - - +
484C GLY* 6.0 2.8 - - - -
487C GLN* 3.9 25.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 290 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283A LEU* 5.5 1.4 + - - +
286A GLY* 2.7 34.3 + - - +
287A ALA* 3.9 6.0 - - - +
289A GLN* 1.3 82.4 - - + +
291A LEU* 1.3 58.0 + - + +
293A GLU* 3.2 8.4 + - - +
294A LEU* 3.0 35.7 + - + +
484C GLY* 3.6 31.2 - - - +
487C GLN* 4.2 7.9 - - - -
488C LYS* 3.8 18.1 - - + +
491C GLU* 2.8 41.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU 291 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287A ALA* 2.6 41.5 + - + +
288A ARG* 4.0 4.7 - - - +
290A LYS* 1.3 72.0 - - + +
292A HIS* 1.3 61.2 + - + +
294A LEU* 3.1 23.7 + - + +
295A GLN* 2.8 39.2 + - - +
----------------------------------------------------------
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Residues in contact with HIS 292 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288A ARG* 2.8 35.4 + - + +
289A GLN* 3.5 6.7 - - - +
291A LEU* 1.3 76.5 - - + +
293A GLU* 1.3 66.0 + - - +
295A GLN* 3.1 26.2 + - - +
296A GLU* 2.8 38.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 293 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A GLN* 2.7 49.3 + - - +
290A LYS* 3.2 11.6 + - - +
292A HIS* 1.3 81.6 - - - +
294A LEU* 1.3 63.1 + - + +
296A GLU* 3.2 27.3 + - + +
297A LYS* 3.4 14.4 + - - +
480C GLU* 4.0 30.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 294 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290A LYS* 3.0 21.9 + - + +
291A LEU* 3.3 28.9 - - + +
293A GLU* 1.3 77.6 - - + +
295A GLN* 1.3 53.4 + - - +
297A LYS* 2.9 7.7 + - + +
298A LEU* 2.7 52.2 + - + +
477C LEU* 4.4 20.6 - - + -
480C GLU* 5.9 3.1 - - + -
481C LEU* 4.9 16.4 - - + -
----------------------------------------------------------
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Residues in contact with GLN 295 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A LEU* 2.8 23.8 + - + +
292A HIS* 3.1 30.4 + - - +
294A LEU* 1.3 70.5 - - - +
296A GLU* 1.3 59.2 + - + +
297A LYS 2.9 9.7 + - - -
298A LEU* 4.2 14.4 - - + -
299A SER* 2.8 32.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 296 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A HIS* 2.8 23.6 + - + +
293A GLU* 3.3 22.4 - - + +
294A LEU 3.1 0.6 - - - -
295A GLN* 1.3 76.5 - - - +
297A LYS* 1.3 70.9 + - + +
300A PRO* 3.0 21.7 - - - +
----------------------------------------------------------
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Residues in contact with LYS 297 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293A GLU 3.6 11.4 - - - +
294A LEU* 2.9 7.3 + - - +
296A GLU* 1.3 92.7 - - - +
298A LEU* 1.3 60.0 + - + +
299A SER 3.1 2.0 - - - -
300A PRO* 3.7 3.1 - - + -
301A LEU* 2.8 64.5 + - + +
476C PRO* 3.5 24.5 - - - +
477C LEU* 4.0 14.6 - - + +
480C GLU* 2.6 47.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 298 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294A LEU* 2.7 39.6 + - + +
295A GLN* 4.2 13.5 - - + +
297A LYS* 1.3 72.7 - - + +
299A SER* 1.3 58.8 + - - +
301A LEU* 5.3 0.2 - - - -
302A GLY* 3.1 24.1 - - - +
306A ARG* 4.8 7.1 + - - -
----------------------------------------------------------
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Residues in contact with SER 299 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A GLN* 2.8 17.7 + - - +
297A LYS 3.1 0.8 - - - -
298A LEU* 1.3 75.9 - - - +
300A PRO* 1.4 67.8 - - - +
303A GLU* 3.0 38.9 + - - +
306A ARG* 5.5 1.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il