Contacts of the helix formed by residues 400 - 472 (chain C) in PDB entry 2MSD
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 400 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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374A GLY* 3.3 17.6 + - - -
377A PRO* 3.7 26.3 - - - +
378A VAL* 3.3 34.6 - - - +
381A SER* 5.6 0.4 + - - -
399C LEU* 1.3 86.8 - - + +
401C LEU* 1.3 65.5 + - - +
402C LEU 3.1 2.9 - - - -
403C ASP* 3.1 32.2 + - + +
404C ASN* 3.1 12.2 + - - +
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Residues in contact with LEU 401 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399C LEU* 3.2 17.9 - - - +
400C LYS* 1.3 79.5 - - - +
402C LEU* 1.3 54.6 + - + +
404C ASN* 3.7 9.3 - - + +
405C TRP* 2.7 43.3 + - + +
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Residues in contact with LEU 402 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399C LEU 4.8 10.3 - - - +
400C LYS 3.1 1.0 - - - -
401C LEU* 1.3 76.7 - - + +
403C ASP* 1.3 64.7 + - - +
405C TRP* 3.7 6.9 - - + +
406C ASP* 2.9 30.3 + - - +
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Residues in contact with ASP 403 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ASP* 5.1 7.4 - - - +
399C LEU 4.5 1.4 - - - +
400C LYS* 3.1 33.0 + - + +
402C LEU* 1.3 82.8 + - - +
404C ASN* 1.3 60.9 + - - +
406C ASP* 3.3 8.3 + - - +
407C SER* 2.9 26.5 + - - -
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Residues in contact with ASN 404 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370A ASP 5.8 0.4 + - - -
371A LEU* 3.6 36.1 + - - +
374A GLY* 5.7 5.7 - - - -
400C LYS 3.1 8.9 + - - +
401C LEU* 3.7 14.8 - - + +
403C ASP* 1.3 80.3 - - - +
405C TRP* 1.3 61.3 + - + +
407C SER* 3.1 12.9 + - - -
408C VAL* 3.0 34.9 + - - +
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Residues in contact with TRP 405 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
401C LEU* 2.7 28.5 + - + +
402C LEU* 3.7 7.9 - - + +
403C ASP 3.3 0.2 - - - -
404C ASN* 1.3 73.1 - - + +
406C ASP* 1.3 50.8 + - - +
408C VAL* 3.1 17.9 + - + +
409C THR* 2.7 60.2 + - - -
412C PHE* 6.0 8.3 - + - -
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Residues in contact with ASP 406 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402C LEU 2.9 18.5 + - - +
403C ASP* 3.5 8.1 - - - +
404C ASN 3.2 0.2 - - - -
405C TRP* 1.3 75.3 - - - +
407C SER* 1.3 54.6 + - - +
409C THR* 3.0 12.6 + - - +
410C SER* 2.8 46.7 + - - -
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Residues in contact with SER 407 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367A ALA* 5.1 13.3 - - - +
370A ASP* 3.9 29.3 + - - +
371A LEU* 6.2 2.5 - - - -
403C ASP 2.9 14.9 + - - -
404C ASN* 3.1 14.9 + - - -
406C ASP* 1.3 81.3 + - - +
408C VAL* 1.3 57.6 + - - +
410C SER* 3.2 9.6 + - - -
411C THR* 3.0 31.4 + - - +
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Residues in contact with VAL 408 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A PCW 6.5 0.4 - - + -
404C ASN* 3.0 26.4 + - - +
405C TRP* 3.4 18.4 - - + +
407C SER* 1.3 73.7 - - - +
409C THR* 1.3 61.2 + - - +
411C THR* 2.6 22.0 + - - +
412C PHE* 2.9 45.1 + - + -
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Residues in contact with THR 409 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405C TRP* 2.7 40.4 + - - -
406C ASP* 3.0 15.6 + - - +
408C VAL* 1.3 77.8 - - - +
410C SER* 1.3 56.0 + - - +
412C PHE* 3.0 14.9 + - + +
413C SER* 2.9 37.1 + - - +
416C ARG* 5.8 5.2 - - - +
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Residues in contact with SER 410 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406C ASP* 2.8 30.2 + - - -
407C SER* 3.2 11.1 + - - -
409C THR* 1.3 76.7 - - - +
411C THR* 1.3 57.3 + - - +
413C SER* 3.2 8.5 + - - -
414C LYS* 2.9 37.3 + - - +
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Residues in contact with THR 411 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
362A GLU* 5.1 2.5 - - + +
363A LYS* 3.6 41.5 - - + -
367A ALA* 4.4 15.0 - - + -
407C SER 3.0 16.9 + - - +
408C VAL* 2.6 28.8 + - - +
410C SER* 1.3 76.4 - - - +
412C PHE* 1.3 58.8 + - - +
414C LYS* 3.4 9.8 + - + +
415C LEU* 2.9 30.0 + - - +
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Residues in contact with PHE 412 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A PCW 5.0 25.6 - - + -
405C TRP* 6.0 7.9 - + - -
408C VAL* 2.9 41.0 + - + -
409C THR* 3.0 13.4 + - + +
411C THR* 1.3 78.3 - - - +
413C SER* 1.3 59.3 + - - +
415C LEU* 3.1 23.2 + - + +
416C ARG* 2.9 52.9 + - - +
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Residues in contact with SER 413 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409C THR* 2.9 20.6 + - - +
410C SER* 3.5 10.7 - - - -
412C PHE* 1.3 75.2 - - - +
414C LYS* 1.3 58.0 + - - +
416C ARG* 3.1 25.3 + - - +
417C GLU* 2.8 38.2 + - - +
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Residues in contact with LYS 414 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359A THR* 4.3 16.4 - - + +
362A GLU* 3.4 42.2 + - + +
363A LYS* 5.4 3.8 - - - -
410C SER* 2.9 24.0 + - - +
411C THR* 3.6 9.6 - - + +
413C SER* 1.3 78.4 - - - +
415C LEU* 1.3 62.3 + - - +
417C GLU* 2.7 30.6 + - - +
418C GLN* 3.1 32.5 + - - +
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Residues in contact with LEU 415 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A PCW 6.3 2.9 - - + -
356A HIS* 6.0 3.8 - - + -
363A LYS* 4.6 12.8 - - - +
411C THR 2.9 17.2 + - - +
412C PHE* 3.2 30.1 - - + +
414C LYS* 1.3 78.1 - - - +
416C ARG* 1.3 51.8 + - + +
418C GLN* 3.1 23.0 + - + +
419C LEU* 2.7 55.3 + - + +
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Residues in contact with ARG 416 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409C THR* 5.6 5.1 + - - +
412C PHE* 2.9 37.4 + - - +
413C SER* 3.1 28.5 + - - +
415C LEU* 1.3 71.8 - - + +
417C GLU* 1.3 60.8 + - - +
418C GLN 3.0 4.9 - - - -
419C LEU* 3.6 19.6 - - + +
420C GLY* 3.1 22.3 + - - -
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Residues in contact with GLU 417 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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359A THR* 5.8 2.7 - - + -
413C SER* 2.8 21.8 + - - +
414C LYS* 2.7 50.8 + - + +
415C LEU 3.2 0.2 - - - -
416C ARG* 1.3 76.0 - - + +
418C GLN* 1.3 57.4 + - + +
421C PRO* 3.1 25.4 - - - +
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Residues in contact with GLN 418 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A GLU* 4.6 8.3 - - + +
356A HIS* 2.7 36.3 + - + +
359A THR* 3.0 40.6 + - + +
363A LYS* 4.7 9.9 - - - +
414C LYS* 3.1 23.8 + - - +
415C LEU* 3.1 28.8 + - + +
416C ARG 3.0 0.4 - - - -
417C GLU* 1.3 79.3 - - - +
419C LEU* 1.3 58.4 + - + +
420C GLY 3.1 0.5 + - - -
421C PRO* 3.3 4.1 - - - +
422C VAL* 2.8 48.5 + - + +
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Residues in contact with LEU 419 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415C LEU* 2.7 44.3 + - + +
416C ARG* 3.6 22.7 - - + +
418C GLN* 1.3 72.6 - - + +
420C GLY* 1.3 52.2 + - - +
422C VAL* 4.4 5.8 - - + -
423C THR* 2.6 55.4 + - + -
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Residues in contact with GLY 420 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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416C ARG 3.1 11.8 + - - -
418C GLN 3.1 0.4 + - - -
419C LEU* 1.3 83.1 - - - +
421C PRO* 1.3 67.0 - - - +
423C THR* 3.0 13.4 + - - -
424C GLN* 3.0 25.0 + - - +
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Residues in contact with PRO 421 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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355A GLU* 6.5 1.1 - - + -
417C GLU* 3.1 28.5 - - - +
418C GLN* 3.3 4.5 - - - +
420C GLY* 1.3 84.9 - - - +
422C VAL* 1.3 62.3 + - + +
424C GLN* 3.1 17.8 + - + +
425C GLU* 2.9 34.9 + - - +
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Residues in contact with VAL 422 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
352A LYS* 4.4 31.5 + - + +
355A GLU* 5.3 8.3 - - + -
356A HIS* 4.7 20.0 - - + +
418C GLN* 2.8 41.1 + - + +
419C LEU* 4.0 5.2 - - + +
421C PRO* 1.3 74.6 - - + +
423C THR* 1.3 57.3 + - + +
425C GLU* 3.4 10.0 - - - +
426C PHE* 2.7 41.5 + - + +
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Residues in contact with THR 423 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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419C LEU* 2.6 46.7 + - + +
420C GLY* 3.0 9.9 + - - -
422C VAL* 1.3 72.8 - - + +
424C GLN* 1.3 58.1 + - - +
426C PHE* 3.8 11.4 - - + -
427C TRP* 2.7 47.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 424 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420C GLY* 3.0 32.5 + - - +
421C PRO* 3.1 15.6 + - - +
423C THR* 1.3 79.4 + - - +
425C GLU* 1.3 57.2 + - - +
427C TRP* 3.3 6.5 + - - +
428C ASP* 3.1 24.4 + - - +
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Residues in contact with GLU 425 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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348A GLU* 3.0 26.5 - - + +
351A ALA* 4.4 9.2 - - - +
352A LYS* 2.6 46.0 + - - +
355A GLU* 5.8 4.5 - - - +
421C PRO* 2.9 27.3 + - - +
422C VAL* 3.4 11.0 - - - +
424C GLN* 1.3 74.0 - - - +
426C PHE* 1.3 54.0 + - - +
428C ASP* 3.1 9.5 + - + +
429C ASN 2.7 29.5 + - - -
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Residues in contact with PHE 426 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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349A TYR* 4.2 20.2 - + - -
352A LYS* 4.3 15.9 - - + +
422C VAL* 2.7 29.5 + - + +
423C THR* 3.2 13.0 + - + +
425C GLU* 1.3 72.9 - - - +
427C TRP* 1.3 58.0 + + - +
429C ASN* 3.2 22.7 + - + +
430C LEU* 2.7 66.8 + - + +
433C GLU* 5.4 0.4 - - - -
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Residues in contact with TRP 427 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423C THR* 2.7 33.5 + - - +
424C GLN* 3.5 7.6 - - - +
426C PHE* 1.3 76.1 - + - +
428C ASP* 1.3 61.5 + - - +
430C LEU* 3.2 23.1 + - + +
431C GLU* 2.9 37.5 + - + +
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Residues in contact with ASP 428 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348A GLU* 4.0 1.9 - - - +
424C GLN 3.1 13.1 + - - +
425C GLU* 3.3 14.0 - - - +
427C TRP* 1.3 76.6 - - - +
429C ASN* 1.3 63.1 + - - +
431C GLU* 3.4 21.5 + - - +
432C LYS* 2.6 52.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 429 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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341A ASN* 4.8 0.3 - - - +
344A ALA 5.3 0.2 - - - -
345A ARG* 2.9 37.4 - - - +
348A GLU* 3.5 15.4 - - - +
349A TYR* 5.6 6.1 - - - -
352A LYS* 4.9 2.9 - - - +
425C GLU 2.7 13.3 + - - +
426C PHE* 3.2 30.9 + - + +
428C ASP* 1.3 75.5 - - - +
430C LEU* 1.3 61.2 + - - +
432C LYS* 3.0 15.7 + - - +
433C GLU* 2.8 58.8 + - - +
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Residues in contact with LEU 430 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426C PHE* 2.7 61.1 + - + +
427C TRP* 3.2 25.1 + - + +
429C ASN* 1.3 73.1 - - - +
431C GLU* 1.3 50.5 + - - +
433C GLU* 3.5 21.4 - - + +
434C THR* 2.6 48.0 + - + +
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Residues in contact with GLU 431 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427C TRP* 2.9 21.1 + - + +
428C ASP* 3.5 27.4 - - - +
429C ASN 3.1 0.2 - - - -
430C LEU* 1.3 77.2 - - + +
432C LYS* 1.3 56.6 + - + +
434C THR* 3.1 7.0 + - - -
435C GLU* 2.9 38.1 + - + +
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Residues in contact with LYS 432 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341A ASN* 3.3 25.6 + - - +
344A ALA* 4.3 18.2 - - + -
348A GLU* 2.6 30.4 + - - +
428C ASP* 2.6 40.8 + - - +
429C ASN* 3.0 8.8 + - - +
431C GLU* 1.3 76.9 - - + +
433C GLU* 1.3 54.7 + - - +
435C GLU* 4.9 1.8 - - - -
436C GLY* 2.7 32.0 + - - +
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Residues in contact with GLU 433 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21A PCW 4.6 8.7 - - - +
341A ASN* 3.2 18.6 - - - +
345A ARG* 2.7 37.4 + - - +
426C PHE* 5.4 0.7 - - - -
429C ASN* 2.8 37.3 + - - +
430C LEU* 3.5 23.5 - - + +
432C LYS* 1.3 73.7 - - - +
434C THR* 1.3 57.3 + - + +
437C LEU* 2.7 50.5 + - + +
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Residues in contact with THR 434 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430C LEU* 2.6 34.6 + - + +
431C GLU* 3.1 16.6 + - - -
433C GLU* 1.3 73.9 - - + +
435C GLU* 1.3 55.5 + - - +
437C LEU* 3.7 7.5 - - + +
438C ARG* 2.8 61.7 + - - +
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Residues in contact with GLU 435 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431C GLU* 2.9 24.8 + - + +
432C LYS* 4.4 2.2 - - - +
434C THR* 1.3 72.0 + - - +
436C GLY* 1.3 65.1 + - - +
438C ARG* 2.7 42.8 + - - +
439C GLN* 3.0 30.3 + - + +
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Residues in contact with GLY 436 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337A ALA* 5.3 2.5 - - - -
341A ASN* 5.1 5.4 - - - -
432C LYS 2.7 25.3 + - - -
435C GLU* 1.3 74.8 - - - +
437C LEU* 1.3 61.2 + - - +
439C GLN* 3.0 37.9 + - - +
440C GLU* 3.3 16.6 + - - +
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Residues in contact with LEU 437 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21A PCW 6.2 4.3 - - + -
334A ARG* 5.9 3.1 - - - +
338A LEU* 4.0 16.4 - - + -
341A ASN* 5.6 0.9 - - - +
433C GLU* 2.7 37.4 + - + +
434C THR* 3.7 7.2 - - + +
436C GLY* 1.3 72.8 - - - +
438C ARG* 1.3 52.4 + - + +
440C GLU* 3.1 28.2 + - + +
441C MET* 2.6 47.3 + - + +
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Residues in contact with ARG 438 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434C THR* 2.8 45.1 + - - +
435C GLU* 2.7 53.5 + - - +
437C LEU* 1.3 76.2 - - + +
439C GLN* 1.3 51.2 + - - +
441C MET* 4.0 9.6 - - + -
442C SER* 2.6 40.5 + - - -
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Residues in contact with GLN 439 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337A ALA* 4.2 15.1 - - + +
340A GLU* 5.4 4.8 + - - -
435C GLU* 3.0 20.5 + - - +
436C GLY* 3.2 22.5 + - - +
438C ARG* 1.3 75.6 - - - +
440C GLU* 1.3 61.7 + - + +
442C SER* 2.9 15.3 + - - -
443C LYS* 3.7 18.2 - - - +
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Residues in contact with GLU 440 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333A ALA* 4.5 5.6 - - + +
334A ARG* 2.9 52.5 + - + +
337A ALA* 3.4 28.6 - - + +
338A LEU* 3.7 16.0 - - - +
436C GLY 3.3 17.3 - - - +
437C LEU* 3.1 32.1 + - + +
439C GLN* 1.3 76.7 - - - +
441C MET* 1.3 54.5 + - + +
443C LYS* 3.3 7.0 + - - +
444C ASP* 2.7 37.6 + - - +
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Residues in contact with MET 441 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334A ARG* 5.3 8.3 - - - -
437C LEU* 2.6 32.0 + - + +
438C ARG* 4.0 10.1 - - + +
440C GLU* 1.3 71.8 - - + +
442C SER* 1.3 56.3 + - - +
444C ASP* 3.8 13.0 - - - -
445C LEU* 2.7 71.2 + - + +
----------------------------------------------------------
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Residues in contact with SER 442 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438C ARG 2.6 25.8 + - - -
439C GLN* 2.9 18.4 + - - -
441C MET* 1.3 73.0 - - - +
443C LYS* 1.3 59.0 + - - +
445C LEU* 4.9 3.1 - - - -
446C GLU* 2.8 42.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 443 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A GLN* 5.9 6.9 - - - +
330A ARG* 5.4 4.9 - - + +
333A ALA* 4.8 21.3 - - + -
439C GLN 3.7 13.5 - - - +
440C GLU* 3.3 7.9 + - - +
442C SER* 1.3 83.2 + - - +
444C ASP* 1.3 55.3 + - - +
446C GLU* 4.0 4.4 - - - +
447C GLU* 2.8 49.2 + - + +
----------------------------------------------------------
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Residues in contact with ASP 444 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330A ARG* 2.6 45.8 + - - +
334A ARG* 2.6 42.7 + - - +
440C GLU 2.7 21.7 + - - +
441C MET* 3.5 15.9 - - - +
443C LYS* 1.3 73.9 - - - +
445C LEU* 1.3 55.3 + - + +
448C VAL* 2.7 42.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 445 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441C MET* 2.7 51.8 + - + +
442C SER* 4.0 3.4 - - - +
444C ASP* 1.3 75.1 - - + +
446C GLU* 1.3 73.8 + - - +
448C VAL* 3.1 16.5 + - + +
449C LYS* 3.1 31.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 446 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442C SER* 2.8 30.1 + - - +
443C LYS* 4.0 4.9 - - - +
445C LEU* 1.3 81.6 - - - +
447C GLU* 1.3 61.9 + - - +
449C LYS* 2.7 52.7 + - - +
450C ALA* 3.3 12.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 447 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326A GLU* 3.5 27.9 - - - +
329A GLN* 3.9 13.9 + - - +
330A ARG* 2.6 42.8 + - - +
443C LYS* 2.8 32.7 + - + +
446C GLU* 1.3 71.7 - - - +
448C VAL* 1.3 60.7 + - - +
450C ALA* 3.1 11.9 + - + +
451C LYS* 2.8 47.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL 448 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A PCW 6.5 1.3 - - + -
330A ARG* 3.2 12.5 - - - +
444C ASP* 2.7 37.4 + - - +
445C LEU* 3.1 20.6 + - + +
447C GLU* 1.3 73.6 - - - +
449C LYS* 1.3 57.8 + - + +
451C LYS* 4.2 5.4 - - + -
452C VAL* 2.6 51.5 + - + +
----------------------------------------------------------
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Residues in contact with LYS 449 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445C LEU* 3.1 17.2 + - - +
446C GLU* 2.7 49.4 + - - +
447C GLU 3.2 0.2 - - - -
448C VAL* 1.3 81.7 - - + +
450C ALA* 1.3 57.6 + - - +
451C LYS 3.2 4.0 + - - -
452C VAL* 5.0 2.5 - - - -
453C GLN* 3.2 47.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 450 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323A TYR* 4.8 1.9 - - - -
326A GLU* 5.5 0.9 - - - +
446C GLU 3.3 8.4 + - - +
447C GLU* 3.1 17.9 + - + +
449C LYS* 1.3 77.4 - - - +
451C LYS* 1.3 59.3 + - - +
453C GLN* 5.1 4.0 - - - +
454C PRO* 3.1 21.3 - - - +
----------------------------------------------------------
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Residues in contact with LYS 451 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A PCW 3.7 29.6 - - + -
323A TYR* 2.8 62.3 + - + +
326A GLU* 2.5 34.3 + - - +
327A LEU* 4.6 4.0 - - + -
330A ARG* 3.4 23.6 - - - +
447C GLU* 2.8 43.5 + - + +
448C VAL* 3.6 5.8 - - + +
450C ALA* 1.3 81.9 - - - +
452C VAL* 1.3 62.4 + - + +
453C GLN 3.3 1.3 - - - -
454C PRO* 3.3 2.4 - - - +
455C TYR* 3.0 14.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 452 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A PCW 4.7 9.9 - - + -
448C VAL* 2.6 41.4 + - + +
449C LYS* 4.6 2.7 - - - +
451C LYS* 1.3 69.2 - - - +
453C GLN* 1.3 59.3 + - + +
455C TYR* 4.0 7.0 - - + -
456C LEU* 2.7 58.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 453 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449C LYS* 3.2 32.9 + - - +
450C ALA* 5.2 2.4 - - - +
452C VAL* 1.3 79.2 - - + +
454C PRO* 1.4 64.6 - - + +
456C LEU* 3.4 4.9 + - - +
457C ASP* 3.1 27.1 + - - +
----------------------------------------------------------
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Residues in contact with PRO 454 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A HIS* 3.0 27.0 + - + +
323A TYR* 3.3 20.4 - - + +
450C ALA* 3.1 27.6 - - - +
451C LYS 3.3 5.2 - - - +
453C GLN* 1.4 94.6 - - + +
455C TYR* 1.3 56.8 + - - -
457C ASP* 3.9 12.1 - - + +
458C ASP 3.0 15.2 + - - -
----------------------------------------------------------
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Residues in contact with TYR 455 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8A PCW 3.9 31.9 - - + +
316A LEU* 4.7 13.8 - - + +
319A HIS* 4.7 3.4 - + + -
320A LEU* 5.5 6.1 - - + +
323A TYR* 3.2 25.5 + + - +
451C LYS 3.0 23.0 + - - +
452C VAL* 3.1 7.4 + - + +
454C PRO* 1.3 76.8 - - - +
456C LEU* 1.3 59.6 + - + +
458C ASP* 3.2 15.2 + - - +
459C PHE* 2.7 69.1 + + - +
----------------------------------------------------------
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Residues in contact with LEU 456 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452C VAL* 2.7 41.2 + - + +
453C GLN* 3.9 4.7 - - - +
455C TYR* 1.3 75.1 - - + +
457C ASP* 1.3 55.4 + - - +
459C PHE* 3.6 5.9 - - + +
460C GLN* 2.7 48.7 + - - +
463C TRP* 4.8 20.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 457 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A HIS* 5.1 2.3 + - - -
453C GLN 3.1 17.6 + - - +
454C PRO* 3.9 11.9 - - + +
456C LEU* 1.3 75.5 - - - +
458C ASP* 1.3 61.8 + - - +
460C GLN* 3.2 13.2 + - - +
461C LYS* 2.6 68.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 458 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ALA* 3.3 18.6 - - - +
316A LEU* 4.0 10.0 - - - +
319A HIS* 3.4 30.2 - - + +
454C PRO 3.0 20.6 + - - +
455C TYR* 3.2 12.3 + - - +
457C ASP* 1.3 79.4 + - - +
459C PHE* 1.3 58.1 + - - +
461C LYS* 3.3 12.9 + - - +
462C LYS* 2.6 60.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 459 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PCW 4.0 28.7 - - + -
73A 17F 5.5 9.6 - - + -
76A 17F 6.0 2.0 - - + -
316A LEU* 5.3 2.7 - - + -
455C TYR* 2.7 67.1 + + - +
456C LEU* 3.7 10.3 - - + +
458C ASP* 1.3 76.2 - - - +
460C GLN* 1.3 54.7 + - - +
462C LYS* 3.2 11.8 + - + +
463C TRP* 2.6 83.8 + + + +
----------------------------------------------------------
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Residues in contact with GLN 460 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456C LEU* 2.7 34.4 + - - +
457C ASP* 3.2 11.4 + - - +
459C PHE* 1.3 70.0 - - - +
461C LYS* 1.3 60.6 + - - +
463C TRP* 3.4 24.0 - - + +
464C GLN* 2.8 36.4 + - + +
----------------------------------------------------------
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Residues in contact with LYS 461 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ALA* 6.5 0.4 - - + -
319A HIS* 5.7 5.0 - - + -
457C ASP* 2.6 50.6 + - - +
458C ASP* 3.4 14.8 - - - +
459C PHE 3.2 0.2 - - - -
460C GLN* 1.3 77.6 - - + +
462C LYS* 1.3 58.6 + - + +
464C GLN* 3.2 10.0 + - - +
465C GLU* 3.0 36.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 462 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PCW 4.0 26.7 - - + -
312A HIS* 3.3 57.8 + - + +
315A ALA* 3.9 4.1 - - + +
316A LEU* 3.5 20.3 - - + +
458C ASP* 2.6 54.9 + - - +
459C PHE* 3.6 13.7 - - + +
461C LYS* 1.3 73.6 - - + +
463C TRP* 1.3 62.0 + - + +
465C GLU* 3.2 12.8 + - - +
466C GLU* 2.8 33.4 + - - +
----------------------------------------------------------
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Residues in contact with TRP 463 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PCW 6.4 1.1 - - + -
73A 17F 4.9 27.6 - - + +
76A 17F 5.2 24.9 - - + +
456C LEU* 4.8 16.8 - - + -
459C PHE* 2.6 60.8 + + + +
460C GLN* 3.2 29.8 + - + +
462C LYS* 1.3 74.0 - - + +
464C GLN* 1.3 54.3 + - - +
466C GLU* 3.6 6.7 - - + +
467C MET* 2.7 53.4 + - + +
----------------------------------------------------------
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Residues in contact with GLN 464 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460C GLN* 2.8 19.6 + - + +
461C LYS* 3.4 11.4 - - - +
463C TRP* 1.3 73.7 - - - +
465C GLU* 1.3 58.1 + - + +
467C MET* 4.1 15.0 - - + -
468C GLU* 2.7 69.6 + - + +
----------------------------------------------------------
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Residues in contact with GLU 465 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308A ARG* 2.7 44.8 + - - +
311A ALA* 3.7 16.3 - - - +
312A HIS* 2.8 39.5 + - + -
461C LYS* 3.0 15.0 + - - +
462C LYS* 3.2 16.3 + - - +
464C GLN* 1.3 76.2 - - + +
466C GLU* 1.3 50.7 + - - +
468C GLU* 4.3 4.4 + - - +
469C LEU* 1.8 50.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 466 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PCW 4.5 20.4 - - + +
76A 17F 5.1 13.5 - - + -
305A MET* 3.6 17.4 - - + +
312A HIS* 2.7 40.7 + - - -
462C LYS* 2.8 17.5 + - - +
463C TRP* 3.7 10.5 - - + +
465C GLU* 1.3 75.7 - - - +
467C MET* 1.3 57.0 + - + +
469C LEU* 2.7 23.6 - - + +
470C TYR* 2.7 65.7 + - + +
----------------------------------------------------------
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Residues in contact with MET 467 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A 17F 4.8 25.8 - - + -
463C TRP* 2.7 45.4 + - + +
464C GLN* 3.8 16.4 - - + +
466C GLU* 1.3 74.3 - - + +
468C GLU* 1.3 61.3 + - + +
470C TYR* 3.2 11.2 + - + +
471C ARG* 3.1 41.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 468 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464C GLN* 2.7 58.6 + - - +
465C GLU* 4.3 3.6 + - - +
467C MET* 1.3 70.0 - - - +
469C LEU* 1.3 64.7 + - + +
471C ARG* 2.9 37.8 + - - +
472C GLN* 3.0 25.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 469 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304A GLU* 4.2 14.4 - - + +
305A MET* 4.3 2.0 - - - -
308A ARG* 3.4 37.0 - - + +
312A HIS* 3.8 8.3 - - - +
465C GLU* 1.8 35.4 + - + +
466C GLU* 2.7 35.0 - - - +
467C MET 3.2 0.2 - - - -
468C GLU* 1.3 78.6 - - + +
470C TYR* 1.3 58.9 + - + +
472C GLN* 3.0 11.3 + - - +
473C LYS* 2.9 61.2 + - + +
----------------------------------------------------------
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Residues in contact with TYR 470 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27A PCW 4.5 15.3 - - + +
47A PCW 6.2 1.8 - - + -
76A 17F 4.0 49.6 - - + +
305A MET* 5.6 7.6 - - + +
466C GLU* 2.7 43.6 + - + +
467C MET* 3.2 8.3 + - - +
469C LEU* 1.3 77.9 - - + +
471C ARG* 1.3 58.1 + - - +
472C GLN 3.2 0.2 - - - -
473C LYS* 3.6 9.6 - - + -
474C VAL* 2.6 57.5 + - + +
475C GLU* 3.3 2.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 471 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467C MET* 3.1 27.6 + - - +
468C GLU* 2.9 39.9 + - - +
470C TYR* 1.3 78.2 - - - +
472C GLN* 1.3 59.5 + - + +
473C LYS 3.3 0.7 - - - -
475C GLU* 3.2 44.3 - - + +
476C PRO* 3.4 3.8 - - - +
----------------------------------------------------------
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Residues in contact with GLN 472 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301A LEU* 3.6 14.7 - - + +
304A GLU* 3.6 28.6 + - - +
468C GLU* 3.0 19.7 + - + +
469C LEU* 3.0 12.5 + - - +
471C ARG* 1.3 79.6 - - + +
473C LYS* 1.3 60.6 + - - +
476C PRO* 3.3 17.6 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il