Contacts of the helix formed by residues 132 - 157 (chain B) in PDB entry 2RD9


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with VAL 132 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61B  LEU*     3.8    24.9    -      -       +      -
     64B  ILE*     3.7    29.6    -      -       +      +
     65B  LEU*     4.2    10.5    -      -       +      -
    112B  VAL*     4.1     8.3    -      -       +      -
    117B  ASP      3.7    12.6    -      -       -      +
    118B  LEU*     3.4    19.0    +      -       +      +
    120B  ARG*     2.9    21.2    +      -       +      +
    131B  LYS*     1.3    70.2    -      -       -      +
    133B  ARG*     1.3    65.8    +      -       -      +
    135B  LEU*     3.0     5.2    +      -       -      +
    136B  LEU*     3.0    44.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 133 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    161A  ASP*     4.5     5.5    +      -       -      +
      1B  MSE      4.0    38.1    -      -       -      +
      3B  PHE*     4.2    33.0    +      -       +      +
    115B  GLU*     4.9     9.9    +      -       -      +
    118B  LEU*     3.0    52.3    +      -       +      +
    119B  GLU*     2.7    29.4    +      -       -      -
    131B  LYS*     3.8    20.4    -      -       +      -
    132B  VAL*     1.3    75.7    -      -       -      +
    134B  GLU*     1.3    58.7    +      -       +      +
    136B  LEU*     3.6     4.1    +      -       -      +
    137B  SER*     2.6    38.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    161A  ASP      3.4    22.0    -      -       -      +
    162A  VAL      4.0     6.0    -      -       -      +
    163A  GLY*     3.8     8.5    -      -       -      +
    164A  PRO*     3.7    22.7    -      -       -      +
    165A  TRP*     3.6    14.0    -      -       +      -
      1B  MSE      5.0    11.0    -      -       +      +
    129B  VAL      4.4     2.1    -      -       -      +
    130B  VAL*     3.4     9.9    -      -       -      -
    131B  LYS*     2.9    44.2    +      -       +      +
    133B  ARG*     1.3    80.0    -      -       +      +
    135B  LEU*     1.3    65.2    +      -       -      +
    137B  SER*     3.8     0.9    -      -       -      -
    138B  ALA*     3.1    24.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 135 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    165A  TRP*     3.6    34.3    -      -       +      -
     57B  TRP*     3.6    31.8    -      -       +      +
     60B  ARG*     3.9    23.3    -      -       +      -
     61B  LEU*     3.4    46.0    -      -       +      +
     64B  ILE*     4.1    11.0    -      -       +      -
     73B  PHE*     5.0     2.9    -      -       +      -
    131B  LYS      3.2     9.7    +      -       -      +
    132B  VAL      3.0     8.7    +      -       -      +
    134B  GLU*     1.3    74.1    -      -       -      +
    136B  LEU*     1.3    63.7    +      -       +      +
    138B  ALA*     3.2     4.9    +      -       -      +
    139B  TRP*     2.9    25.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 136 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      3B  PHE*     3.8    22.4    -      -       +      -
      5B  MSE      4.2     6.7    -      -       -      -
      8B  ALA*     5.8     0.4    -      -       +      -
     12B  LEU*     5.0     1.9    -      -       +      +
     57B  TRP      6.5     0.7    -      -       -      -
     61B  LEU*     4.4    14.1    -      -       +      -
    108B  LEU*     3.6    36.3    -      -       +      -
    112B  VAL*     4.6     1.3    -      -       +      -
    118B  LEU*     3.8    18.2    -      -       +      -
    132B  VAL*     3.0    36.8    +      -       +      +
    133B  ARG      4.0     1.3    -      -       -      +
    135B  LEU*     1.3    80.3    -      -       +      +
    137B  SER*     1.3    60.7    +      -       -      +
    139B  TRP*     3.3    28.2    -      -       +      +
    140B  VAL*     3.1    31.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 137 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    158A  TYR*     3.8    12.8    -      -       -      -
    161A  ASP*     3.3    41.1    -      -       -      +
    162A  VAL*     3.8     4.3    -      -       -      -
      3B  PHE*     3.2    18.5    -      -       -      +
    133B  ARG*     2.6    22.8    +      -       -      +
    134B  GLU      3.8     1.6    -      -       -      -
    136B  LEU*     1.3    74.7    -      -       -      +
    138B  ALA*     1.3    60.4    +      -       -      +
    140B  VAL*     3.2     3.1    +      -       -      +
    141B  VAL*     2.9    33.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 138 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    162A  VAL*     3.8    11.1    -      -       +      +
    165A  TRP*     3.8    37.0    -      -       +      -
    169A  LEU*     4.2     8.1    -      -       +      +
     57B  TRP*     3.8    13.2    -      -       +      -
    134B  GLU      3.1    19.4    +      -       -      +
    135B  LEU      3.5     4.5    -      -       -      +
    137B  SER*     1.3    72.0    -      -       -      +
    139B  TRP*     1.3    55.8    +      -       -      +
    141B  VAL*     4.0     0.4    -      -       -      +
    142B  HIS*     2.7    37.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 139 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12B  LEU*     3.7    24.8    -      -       +      +
     53B  GLU*     3.3    28.1    +      -       -      -
     57B  TRP*     3.1    56.7    -      +       +      -
     58B  ILE*     3.9    31.2    -      -       +      -
    101B  ARG*     3.5    20.5    -      -       -      +
    104B  ASN*     4.1    16.4    -      -       +      -
    105B  LEU*     4.3     9.2    -      -       +      -
    108B  LEU*     4.0    18.6    -      -       +      -
    135B  LEU      2.9    13.1    +      -       -      +
    136B  LEU*     3.3    29.6    -      -       +      +
    138B  ALA*     1.3    76.8    -      -       -      +
    140B  VAL*     1.3    61.2    +      -       -      +
    142B  HIS*     3.3     6.8    +      -       +      +
    143B  ASP*     3.3    11.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 140 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30A  TRP*     4.3     2.2    -      -       +      -
    158A  TYR*     3.8    21.1    -      -       +      -
      8B  ALA*     3.6    40.2    -      -       +      +
     11B  LEU*     3.6    32.3    -      -       +      -
     12B  LEU*     3.8    17.0    -      -       +      -
    136B  LEU      3.1    17.8    +      -       -      +
    137B  SER      3.2     6.5    +      -       -      +
    139B  TRP*     1.3    75.5    -      -       -      +
    141B  VAL*     1.3    64.4    +      -       -      +
    142B  HIS      3.3     0.5    +      -       -      -
    143B  ASP*     3.3     5.2    +      -       -      +
    144B  LEU*     3.2    25.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 141 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    155A  ALA*     3.7    26.9    -      -       +      +
    158A  TYR*     3.5    30.5    -      -       +      -
    162A  VAL*     3.6    12.1    -      -       +      -
    169A  LEU*     3.7    23.3    -      -       +      -
    137B  SER      2.9    21.0    +      -       -      +
    138B  ALA      4.0     2.2    -      -       -      +
    140B  VAL*     1.3    77.6    -      -       +      +
    142B  HIS*     1.3    57.1    +      -       -      +
    144B  LEU*     3.7     5.9    -      -       -      +
    145B  THR*     2.8    45.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 142 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    169A  LEU*     4.1    12.7    -      -       +      +
    303A  IMD      3.2    14.6    -      +       -      -
     48B  HIS*     3.4     9.9    -      +       -      -
     49B  LEU*     4.0    12.2    -      -       +      +
     52B  ALA*     4.3    13.2    -      -       +      +
     57B  TRP*     3.5    25.7    +      +       +      -
    138B  ALA      2.7    22.2    +      -       -      +
    139B  TRP      3.5     3.1    -      -       -      +
    140B  VAL      3.2     0.2    -      -       -      -
    141B  VAL*     1.3    71.9    -      -       -      +
    143B  ASP*     1.3    67.0    +      -       -      +
    145B  THR*     3.5     2.0    +      -       -      -
    146B  HIS*     3.1    42.4    +      +       -      -
    300B   NI      2.1    45.1    -      -       +      +
     -9C  HIS*     3.0    14.4    +      +       -      -
----------------------------------------------------------
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Residues in contact with ASP 143 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11B  LEU*     5.2     0.6    -      -       +      -
     12B  LEU*     3.7     8.1    -      -       +      +
     15B  THR*     2.7    36.5    +      -       +      +
     49B  LEU*     4.0    19.5    -      -       -      +
     57B  TRP*     5.7     0.2    +      -       -      -
     97B  PHE*     4.5     0.2    -      -       -      -
    101B  ARG*     2.7    38.1    +      -       -      -
    139B  TRP*     3.3    13.0    +      -       -      +
    140B  VAL*     3.4    11.0    -      -       -      +
    142B  HIS*     1.3    79.5    +      -       -      +
    144B  LEU*     1.3    65.2    +      -       +      +
    146B  HIS*     3.2     4.3    +      -       -      +
    147B  ILE*     3.0    29.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 144 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22A  PHE*     3.8    29.6    -      -       +      -
    151A  VAL*     2.9    38.9    -      -       +      +
    154A  MSE      3.8     7.9    -      -       +      +
    155A  ALA*     3.5    39.5    -      -       +      +
     11B  LEU*     3.8    34.3    -      -       +      -
     15B  THR*     6.1     0.2    -      -       -      +
    140B  VAL*     3.2    20.7    +      -       +      +
    141B  VAL*     3.8     6.1    -      -       +      +
    143B  ASP*     1.3    81.7    -      -       +      +
    145B  THR*     1.3    61.6    +      -       -      +
    147B  ILE*     3.3     7.3    +      -       +      +
    148B  ALA*     3.1    10.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 145 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    155A  ALA*     5.2     3.5    -      -       -      +
    169A  LEU*     3.5    26.0    +      -       -      +
    172A  LEU*     3.7    24.1    -      -       +      +
    303A  IMD      3.9     9.6    -      -       +      -
    141B  VAL*     2.8    40.0    +      -       -      +
    142B  HIS*     3.8     7.2    -      -       -      -
    144B  LEU*     1.3    72.6    -      -       -      +
    146B  HIS*     1.3    58.0    +      -       -      +
    148B  ALA*     3.5     7.0    +      -       -      +
    149B  GLN*     2.9    24.6    +      -       -      +
    152B  ARG*     4.9     1.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with HIS 146 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    172A  LEU*     4.5     4.9    -      -       +      +
    173A  ASN      5.6     3.1    -      -       -      -
    303A  IMD      3.2    12.4    +      +       -      -
     40B  TRP*     4.4     8.1    -      +       -      -
     45B  VAL*     3.6    17.3    -      -       +      +
     48B  HIS*     3.0    14.5    +      +       -      -
     49B  LEU*     4.0    13.7    -      -       +      -
    142B  HIS*     3.1    42.7    +      +       -      +
    143B  ASP      3.9     2.5    -      -       -      +
    145B  THR*     1.3    74.1    -      -       -      +
    147B  ILE*     1.3    61.2    +      -       -      +
    149B  GLN*     2.7    30.1    +      -       -      +
    150B  ILE*     2.8    34.5    +      -       -      +
    300B   NI      2.2    36.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 147 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22A  PHE*     4.0    29.6    -      -       +      -
    147A  ILE*     5.0     2.9    -      -       +      -
    151A  VAL*     3.7    20.2    -      -       +      -
     15B  THR*     4.0    24.2    -      -       +      +
     18B  THR*     5.3     7.0    -      -       +      -
     19B  LEU*     4.0    23.8    -      -       +      -
     22B  PHE*     6.0     2.7    -      -       +      -
     49B  LEU*     5.8     0.4    -      -       +      -
    143B  ASP      3.0    24.6    +      -       -      +
    144B  LEU*     3.3    13.0    +      -       +      +
    146B  HIS*     1.3    75.7    -      -       -      +
    148B  ALA*     1.3    56.7    +      -       -      +
    150B  ILE*     3.1    12.1    +      -       +      +
    151B  VAL*     2.8    38.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 148 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148A  ALA*     5.0     9.2    -      -       +      -
    151A  VAL*     4.0    16.1    -      -       +      +
    152A  ARG*     4.9    14.6    -      -       +      +
    144B  LEU      3.1    13.2    +      -       -      +
    145B  THR*     3.6    11.4    -      -       -      +
    147B  ILE*     1.3    73.5    -      -       -      +
    149B  GLN*     1.3    58.9    +      -       -      +
    151B  VAL*     3.7     6.8    -      -       -      +
    152B  ARG*     2.9    50.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 149 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    172A  LEU*     4.1    15.7    -      -       +      +
    173A  ASN*     3.0    36.6    +      -       -      +
     35B  GLU*     4.0    14.3    +      -       +      +
     39B  THR*     5.5     1.2    -      -       -      -
     40B  TRP*     4.4     7.5    +      -       -      +
     45B  VAL*     3.5    23.9    -      -       +      +
    145B  THR      2.9    15.0    +      -       -      +
    146B  HIS*     2.7    43.3    +      -       -      +
    147B  ILE      3.2     0.2    -      -       -      -
    148B  ALA*     1.3    76.9    -      -       -      +
    150B  ILE*     1.3    62.8    +      -       -      +
    152B  ARG*     3.7    15.9    -      -       -      +
    153B  SER*     3.0    31.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 150 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19B  LEU*     4.1    24.7    -      -       +      -
     22B  PHE*     4.4     8.7    -      -       +      -
     23B  LEU*     4.2     8.5    -      -       +      -
     42B  VAL*     3.7    31.5    -      -       +      +
     45B  VAL*     3.7    29.8    -      -       +      -
     46B  VAL*     4.0    23.1    -      -       +      +
     49B  LEU*     5.1     0.7    -      -       +      -
    146B  HIS      2.8    16.1    +      -       -      +
    147B  ILE*     3.4     8.3    -      -       -      +
    149B  GLN*     1.3    77.3    -      -       -      +
    151B  VAL*     1.3    62.7    +      -       -      +
    153B  SER*     3.3     6.5    +      -       -      -
    154B  MSE      3.2    36.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 151 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    144A  LEU*     2.9    43.1    -      -       +      +
    147A  ILE*     3.6    24.5    -      -       +      -
    148A  ALA*     4.0    15.0    -      -       +      +
     22B  PHE*     3.8    23.3    -      -       +      -
    147B  ILE*     2.8    26.0    +      -       +      +
    148B  ALA*     3.8     6.7    -      -       -      +
    150B  ILE*     1.3    76.6    -      -       -      +
    152B  ARG*     1.3    56.8    +      -       -      +
    154B  MSE      3.3     8.6    +      -       -      +
    155B  ALA*     3.0    26.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 152 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148A  ALA*     4.8    13.7    -      -       +      -
    152A  ARG*     5.8     9.4    -      -       -      +
    172A  LEU*     3.2    25.9    -      -       -      +
     35B  GLU*     2.8    47.2    +      -       -      +
    145B  THR      4.9     1.0    +      -       -      -
    148B  ALA*     2.9    41.3    +      -       -      +
    149B  GLN*     3.7     9.1    -      -       -      +
    151B  VAL*     1.3    73.1    -      -       -      +
    153B  SER*     1.3    61.3    +      -       -      +
    155B  ALA*     3.4     8.1    +      -       -      +
    156B  LYS*     2.9    29.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 153 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33B  CYS*     3.3    21.8    +      -       -      +
     34B  ASN*     3.4    44.1    -      -       -      +
     35B  GLU*     3.6    10.5    +      -       -      +
     40B  TRP      4.5     5.0    +      -       -      -
     41B  THR      5.6     0.2    -      -       -      -
     42B  VAL*     4.2     4.5    +      -       -      +
    149B  GLN*     3.0    19.1    +      -       -      +
    150B  ILE*     3.4     9.7    -      -       -      -
    152B  ARG*     1.3    74.7    -      -       -      +
    154B  MSE      1.3    62.8    +      -       -      +
    156B  LYS*     3.4     7.5    +      -       -      -
    157B  ARG      3.5     6.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with MSE 154 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11A  LEU*     3.0    40.8    -      -       +      -
    144A  LEU*     3.8    13.0    -      -       +      +
     22B  PHE*     3.8    24.2    -      -       +      -
     23B  LEU*     3.8    22.0    -      -       +      -
     26B  LEU*     3.6    17.0    -      -       +      -
     30B  TRP*     3.5    24.3    -      -       +      +
     33B  CYS*     3.5    19.1    -      -       -      -
     42B  VAL*     4.1     5.4    -      -       +      -
    150B  ILE*     3.2    18.7    +      -       -      +
    151B  VAL      3.6     7.2    -      -       -      +
    153B  SER*     1.3    77.0    -      -       -      +
    155B  ALA*     1.3    61.3    +      -       -      +
    157B  ARG*     3.2    19.4    -      -       -      +
    158B  TYR*     4.3     2.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 155 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    141A  VAL*     4.0    24.4    -      -       +      +
    144A  LEU*     3.5    25.0    -      -       +      +
    145A  THR*     5.0     4.7    -      -       -      +
    151B  VAL      3.0    16.9    +      -       -      +
    152B  ARG*     3.8     9.0    -      -       -      +
    153B  SER      3.3     0.2    -      -       -      -
    154B  MSE      1.3    75.0    -      -       -      +
    156B  LYS*     1.3    62.8    +      -       -      +
    158B  TYR*     3.1    20.1    +      -       -      +
    159B  ASP*     3.8     6.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 156 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     -1A  GLN*     2.7    41.4    +      -       -      +
    305A  GOL      2.7    40.6    +      -       -      -
     34B  ASN      4.1     5.2    -      -       -      +
     35B  GLU*     3.5    36.3    -      -       +      +
     36B  GLY*     4.1     4.2    -      -       -      +
    152B  ARG      2.9    17.7    +      -       -      +
    153B  SER*     3.6     7.9    -      -       -      +
    154B  MSE      3.3     0.2    -      -       -      -
    155B  ALA*     1.3    73.1    -      -       -      +
    157B  ARG*     1.3    53.0    +      -       -      +
    158B  TYR      3.1     3.1    +      -       -      -
    159B  ASP*     3.2    28.5    +      -       -      +
    167C  GLU*     3.4    12.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 157 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     -1A  GLN*     3.3     7.1    +      -       -      +
      2A  ASN*     2.8    67.9    +      -       +      +
      4A  GLN*     5.4     1.2    -      -       -      +
      7A  GLU*     3.1    28.7    +      -       -      -
     29B  SER*     3.5    32.3    +      -       -      -
     30B  TRP*     4.0    29.5    -      -       +      -
     33B  CYS*     4.0    23.1    -      -       +      -
    153B  SER      3.5     6.3    +      -       -      +
    154B  MSE      3.2    18.8    +      -       -      +
    156B  LYS*     1.3    77.3    -      -       -      +
    158B  TYR*     1.3    61.5    +      -       +      +
    161B  ASP*     3.4     2.8    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il