Contacts of the helix formed by residues 655 - 693 (chain A) in PDB entry 5MKF
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 655 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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653A ASN* 3.3 4.7 + - - +
654A ARG* 1.3 80.6 - - - +
656A LEU* 1.3 67.8 + - + +
658A PRO* 4.3 2.1 - - - +
659A ILE* 3.2 25.1 + - + +
1006D PX6 3.2 93.4 + - + +
1008D PLM 5.3 18.8 - - + +
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Residues in contact with LEU 656 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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618A VAL* 3.6 29.4 - - + -
619A PHE* 4.7 1.3 - - + -
653A ASN* 3.3 31.9 + - + +
655A VAL* 1.3 84.0 - - + +
657A GLY* 1.3 59.3 + - - +
658A PRO 3.0 2.2 - - - -
659A ILE* 2.2 47.9 + - + -
660A TYR* 2.8 14.1 + - + +
560D ASN* 3.3 31.2 - - + +
564D VAL* 5.0 9.9 - - + -
1006D PX6 5.0 14.8 - - + -
1007D PLM 6.4 0.9 - - + -
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Residues in contact with GLY 657 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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619A PHE* 3.5 27.9 - - - -
646A PHE* 5.3 0.2 - - - -
649A ILE* 3.5 19.8 - - - +
653A ASN 2.9 14.9 + - - -
656A LEU* 1.3 72.0 - - - +
658A PRO* 1.3 67.4 - - - +
660A TYR* 4.1 1.0 - - - +
661A PHE* 3.1 26.3 + - - +
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Residues in contact with PRO 658 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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646A PHE* 5.1 3.6 - - + -
649A ILE* 4.9 3.6 - - + -
650A GLU* 4.8 15.5 - - + -
653A ASN 3.5 4.7 - - - +
654A ARG* 3.0 28.5 - - - +
655A VAL 4.4 2.5 - - - +
656A LEU 2.8 1.1 - - - -
657A GLY* 1.3 89.0 - - - +
659A ILE* 1.3 55.4 + - - +
661A PHE* 3.6 2.4 - - + +
662A THR* 2.5 40.7 + - - -
634D PHE* 3.3 40.4 - - + -
1008D PLM 5.0 12.1 - - + -
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Residues in contact with ILE 659 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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655A VAL* 3.2 20.8 + - + +
656A LEU* 2.2 46.6 + - + +
658A PRO* 1.3 69.6 - - + +
660A TYR* 1.3 54.2 + - - +
662A THR* 4.4 4.7 - - - -
663A THR* 2.7 53.3 + - + +
1006D PX6 4.8 44.2 - - + -
1007D PLM 4.9 15.6 - - + +
1008D PLM 5.3 20.6 - - + -
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Residues in contact with TYR 660 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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611A TYR* 3.3 48.0 - + + +
614A LEU* 4.4 16.6 - - + -
615A ALA* 4.4 13.8 - - + +
619A PHE* 3.9 32.5 - + + -
626A PHE* 4.8 14.7 - + - -
636A GLN* 4.1 25.8 + - - +
639A ILE* 5.5 10.2 - - + +
649A ILE* 5.6 5.2 - - + -
656A LEU* 2.8 14.3 + - + +
657A GLY 4.5 0.7 - - - -
659A ILE* 1.3 78.8 - - - +
661A PHE* 1.3 82.6 + + + +
663A THR* 2.6 22.8 + - - -
664A PHE* 2.8 24.3 + + + +
1007D PLM 5.5 4.5 - - - -
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Residues in contact with PHE 661 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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639A ILE* 4.6 22.4 - - + -
644A ILE* 5.1 9.9 - - + -
646A PHE* 3.6 40.8 - + + -
649A ILE* 5.2 4.7 - - + -
657A GLY 3.1 18.9 + - - +
658A PRO 3.6 0.7 - - - +
660A TYR* 1.3 90.6 - + + +
662A THR* 1.3 76.4 + - - +
664A PHE* 3.1 6.3 + + - +
665A VAL* 3.0 42.0 + - + +
634D PHE* 4.8 5.6 - + + -
637D PHE* 4.2 25.1 - + + -
638D ARG* 4.8 11.9 - - + -
641D LEU* 4.3 21.5 - - + -
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Residues in contact with THR 662 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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658A PRO 2.5 27.5 + - - -
659A ILE* 4.3 4.0 - - - -
661A PHE* 1.3 78.6 - - - +
663A THR* 1.3 67.1 + - - +
665A VAL* 3.2 6.8 - - - +
666A PHE* 3.1 20.9 + - + +
634D PHE* 3.2 29.4 - - + -
637D PHE* 4.1 25.9 - - + -
1008D PLM 4.1 37.1 - - + +
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Residues in contact with THR 663 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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611A TYR* 3.8 20.2 - - - -
659A ILE* 2.7 27.5 + - + +
660A TYR* 2.6 22.4 + - - -
662A THR* 1.3 77.5 - - - +
664A PHE* 1.3 55.5 + - - +
666A PHE* 2.8 8.4 + - - +
667A PHE* 2.7 42.7 + - + +
1007D PLM 4.5 20.0 - - + +
1008D PLM 5.1 17.5 - - + -
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Residues in contact with PHE 664 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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608A PHE* 5.3 4.3 - + - -
611A TYR* 3.9 40.2 - + + -
636A GLN* 3.4 43.5 - - + -
639A ILE* 3.8 30.3 - - + -
640A ILE* 3.7 19.3 - - + -
660A TYR* 2.8 27.6 + + + +
661A PHE* 3.1 8.5 + + - +
663A THR* 1.3 81.0 + - - +
665A VAL* 1.3 77.1 + - + +
667A PHE 4.6 0.2 - - - +
668A MET* 2.8 50.2 + - + +
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Residues in contact with VAL 665 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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661A PHE* 3.0 23.9 + - + +
662A THR* 3.2 17.9 - - - +
664A PHE* 1.3 86.4 - - + +
666A PHE* 1.3 68.7 + - - +
669A PHE* 2.9 29.7 - - + +
670A PHE* 4.4 6.0 - - + -
637D PHE* 4.2 24.7 - - + -
640D ILE* 6.3 0.9 - - + -
641D LEU* 3.5 46.0 - - + -
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Residues in contact with PHE 666 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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662A THR* 3.1 15.4 + - + +
663A THR* 2.8 14.2 + - - +
665A VAL* 1.3 79.0 - - + +
667A PHE* 1.3 81.6 + + - +
670A PHE* 2.7 74.6 + + + +
597D LEU* 6.0 6.3 - - + -
601D ALA* 4.6 19.3 - - + -
604D PHE* 5.5 8.7 - + - -
605D PHE* 6.2 3.8 - + - -
637D PHE* 5.1 12.8 - + + -
676D PHE* 5.2 4.9 - + - -
1008D PLM 3.9 36.3 - - + -
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Residues in contact with PHE 667 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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607A ILE* 6.3 2.0 - - + -
611A TYR* 3.5 24.2 - + + +
663A THR* 2.7 21.4 + - + +
664A PHE* 4.3 0.4 - - - +
666A PHE* 1.3 100.3 - + - +
668A MET* 1.3 52.6 + - - +
670A PHE* 2.6 7.4 + - - -
671A ILE* 2.2 44.6 + - + +
1007D PLM 3.4 59.2 - - + -
1008D PLM 5.1 9.4 - - + -
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Residues in contact with MET 668 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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604A PHE* 4.7 9.8 - - + -
608A PHE* 5.9 0.7 - - + -
611A TYR* 5.7 3.8 - - + -
640A ILE* 4.5 9.0 - - + -
664A PHE* 2.8 50.1 + - + +
667A PHE* 1.3 73.9 - - - +
669A PHE* 1.3 56.9 + - - +
671A ILE* 3.3 12.9 - - + +
672A LEU* 2.9 34.9 + - - +
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Residues in contact with PHE 669 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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640A ILE* 4.3 22.6 - - + +
664A PHE 3.7 0.2 + - - -
665A VAL* 2.9 28.3 + - + +
667A PHE 3.1 0.4 - - - -
668A MET* 1.3 79.3 - - - +
670A PHE* 1.3 83.2 + + - +
672A LEU* 3.7 27.7 - - + +
673A LEU* 3.3 20.2 - - + +
1014A CA 4.3 13.7 - - - -
669B PHE* 5.5 9.2 - + - -
640D ILE* 5.2 8.1 - - + -
641D LEU* 3.9 25.6 - - + -
669D PHE* 5.5 7.4 - + - -
672D LEU* 4.8 17.9 - - + -
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Residues in contact with PHE 670 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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665A VAL* 4.5 6.5 - - + -
666A PHE* 2.7 62.7 + + + +
667A PHE* 2.6 9.7 + - - +
669A PHE* 1.3 103.1 - + - +
671A ILE* 1.3 59.5 + - - +
673A LEU* 3.6 23.8 - - + +
674A ASN* 3.9 4.2 + - - +
604D PHE* 5.3 10.3 - + - -
637D PHE* 5.7 7.9 - + - -
640D ILE* 6.0 6.7 - - + -
672D LEU* 5.1 12.8 - - + -
676D PHE* 3.5 41.5 - + + -
680D ILE* 4.1 8.8 - - - +
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Residues in contact with ILE 671 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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603A MET* 5.4 5.2 - - + -
604A PHE* 4.1 25.1 - - + -
607A ILE* 5.4 8.1 - - + -
667A PHE* 2.2 32.4 + - + +
668A MET* 3.3 20.6 - - - +
670A PHE* 1.3 67.8 - - - +
672A LEU* 1.3 62.1 + - - +
673A LEU 3.1 1.8 - - - -
674A ASN* 2.7 36.4 + - + +
675A MET* 3.3 19.7 + - + +
590D MET* 3.6 35.4 - - + -
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Residues in contact with LEU 672 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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604A PHE* 5.1 9.4 - - + -
640A ILE* 4.0 23.8 - - + -
668A MET 2.9 23.1 + - - +
669A PHE* 3.7 36.1 - - + +
671A ILE* 1.3 78.3 - - + +
673A LEU* 1.3 89.2 + - + +
676A PHE* 3.1 52.9 + - + +
677A LEU* 4.9 0.3 - - - +
669B PHE* 4.8 15.0 - - + -
670B PHE* 5.0 9.6 - - + -
673B LEU* 5.0 10.0 - - + +
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Residues in contact with LEU 673 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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669A PHE* 3.3 28.7 - - + +
670A PHE* 3.6 21.1 - - + +
672A LEU* 1.3 90.3 - - + +
674A ASN* 1.3 68.3 + - - +
677A LEU* 3.1 31.3 + - + +
1015A CA 4.7 10.3 - - - -
673B LEU* 6.3 0.4 - - + -
672D LEU* 5.1 8.7 - - + +
673D LEU* 6.4 0.2 - - + -
676D PHE* 3.7 35.4 - - + -
677D LEU* 3.4 35.7 - - + -
680D ILE* 4.0 2.5 - - + -
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Residues in contact with ASN 674 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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670A PHE 4.1 2.5 - - - +
671A ILE* 2.7 24.2 + - + +
673A LEU* 1.3 78.1 - - - +
675A MET* 1.3 81.3 + - - +
678A ALA* 3.8 12.1 + - - +
679A ILE* 5.3 0.2 - - - +
590D MET* 2.5 42.8 - - - +
593D CYS* 4.2 9.1 - - - +
680D ILE* 3.1 49.1 - - + +
684D TYR* 5.7 3.6 - - - +
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Residues in contact with MET 675 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597A LEU* 6.0 0.9 - - - -
600A PHE* 3.3 48.0 - - + -
603A MET* 3.8 13.7 - - + -
604A PHE* 6.0 2.7 - - + -
671A ILE* 3.3 16.3 + - + +
674A ASN* 1.3 120.3 - - - +
676A PHE* 1.3 76.0 + - + +
679A ILE* 3.0 41.4 + - + +
586D LEU 5.5 1.1 - - - +
589D THR* 5.0 6.3 - - - +
590D MET* 3.5 27.6 - - + +
684D TYR* 6.1 3.1 - - + -
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Residues in contact with PHE 676 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597A LEU* 4.7 30.3 - - + -
600A PHE* 5.3 1.8 - + - -
601A ALA* 6.0 3.8 - - + -
604A PHE* 4.9 24.5 - + + -
672A LEU* 3.1 33.7 - - + +
673A LEU 3.4 0.6 + - - -
674A ASN 3.3 1.0 - - - -
675A MET* 1.3 86.5 - - + +
677A LEU* 1.3 56.5 + - + +
679A ILE* 3.5 0.7 - - - +
680A ILE* 2.6 47.9 + - + +
666B PHE* 5.3 5.6 - + - -
670B PHE* 3.5 48.5 - + + -
673B LEU* 3.6 29.8 - - + -
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Residues in contact with LEU 677 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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673A LEU* 3.1 23.8 + - + +
676A PHE* 1.3 79.0 - - + +
678A ALA* 1.3 51.6 + - - +
680A ILE* 3.0 8.8 + - + +
681A ASN* 2.5 38.9 + - - +
673B LEU* 3.4 48.7 - - + +
677B LEU* 3.6 29.8 - - + -
677D LEU* 3.7 37.7 - - + -
680D ILE* 6.2 0.9 - - + -
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Residues in contact with ALA 678 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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674A ASN* 3.8 13.6 + - - +
676A PHE 3.4 0.4 - - - -
677A LEU* 1.3 76.9 - - - +
679A ILE* 1.3 56.0 + - + +
681A ASN* 2.4 23.4 + - - +
682A ASP* 2.8 18.4 + - - +
680D ILE* 4.4 5.5 - - + +
681D ASN* 3.1 49.1 - - + +
684D TYR* 4.5 13.9 - - + -
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Residues in contact with ILE 679 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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593A CYS* 5.2 4.6 - - + +
596A ASP* 3.2 33.4 - - + +
597A LEU* 5.3 13.7 - - + -
600A PHE* 5.3 9.0 - - + -
675A MET* 3.0 48.2 + - + +
676A PHE 3.2 1.9 + - - +
678A ALA* 1.3 73.9 - - + +
680A ILE* 1.3 56.2 + - - +
682A ASP* 2.6 22.9 - - - +
683A THR* 3.6 12.1 + - + +
586D LEU* 5.6 2.7 - - + -
589D THR* 5.9 0.4 - - - +
684D TYR* 3.5 37.0 - - + +
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Residues in contact with ILE 680 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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593A CYS* 5.8 6.1 - - + -
597A LEU* 5.6 9.4 - - + -
676A PHE* 2.6 34.9 + - + +
677A LEU* 3.0 13.2 - - + +
679A ILE* 1.3 74.1 - - - +
681A ASN* 1.3 68.9 + - - +
683A THR* 3.1 17.8 + - - -
684A TYR* 3.7 6.8 + - - +
670B PHE 4.2 7.4 - - - +
673B LEU* 4.0 13.5 - - + +
674B ASN* 3.1 72.8 - - + +
677B LEU* 6.2 0.2 - - + -
678B ALA* 4.2 5.8 - - + +
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Residues in contact with ASN 681 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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677A LEU 2.5 15.5 + - - +
678A ALA* 2.4 17.1 + - - +
680A ILE* 1.3 73.8 - - - +
682A ASP* 1.3 68.1 + - - +
684A TYR* 3.2 3.8 + - - +
685A SER* 3.1 22.7 + - - -
1012A CA 2.6 29.5 - - - -
678B ALA* 3.1 39.4 + - + +
681B ASN* 3.0 13.7 + - - +
682B ASP* 4.8 3.4 - - - +
681D ASN* 3.1 10.1 + - - +
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Residues in contact with ASP 682 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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678A ALA 2.8 12.9 + - - +
679A ILE* 2.6 25.8 - - - +
681A ASN* 1.3 73.0 - - - +
683A THR* 1.3 79.3 + - - +
685A SER* 2.2 43.9 + - - -
686A GLU* 2.8 7.4 + - - +
681D ASN* 5.0 2.6 - - - +
684D TYR* 3.0 34.0 + - + -
685D SER* 5.2 14.1 - - - -
688D LYS* 5.1 4.7 + - - +
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Residues in contact with THR 683 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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589A THR 5.5 1.8 + - - -
592A ARG* 5.3 12.3 - - + -
593A CYS* 4.5 23.1 - - - +
596A ASP* 5.9 4.5 - - + +
679A ILE* 3.6 12.0 + - + +
680A ILE* 3.1 13.2 + - - -
682A ASP* 1.3 95.3 + - - +
684A TYR* 1.3 57.8 + - - +
686A GLU* 3.0 9.8 + - - +
687A VAL* 2.7 41.8 + - - +
688D LYS* 5.9 4.7 - - - +
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Residues in contact with TYR 684 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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586A LEU* 3.4 26.4 - - + +
589A THR* 3.7 36.3 - - + -
680A ILE 4.2 5.8 - - - +
681A ASN* 3.2 7.7 + - - +
682A ASP 3.1 1.0 - - - -
683A THR* 1.3 82.4 + - - +
685A SER* 1.3 60.6 + - - +
687A VAL* 3.5 4.7 - - - -
688A LYS* 2.7 67.4 + - + +
596B ASP* 3.5 9.9 + - - -
674B ASN* 5.8 2.5 - - - +
675B MET* 6.2 3.1 - - + -
678B ALA* 4.5 8.5 - - + -
679B ILE* 3.5 34.8 - - + -
682B ASP* 2.9 31.3 + - + -
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Residues in contact with SER 685 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
681A ASN* 3.1 17.1 + - - -
682A ASP* 2.2 38.4 + - - -
684A TYR* 1.3 78.2 - - - +
686A GLU* 1.3 50.5 + - - +
688A LYS* 4.5 2.4 - - - +
689A SER* 2.7 34.0 + - - -
682B ASP* 5.1 12.6 - - - -
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Residues in contact with GLU 686 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
682A ASP 2.8 10.4 + - - +
683A THR* 3.3 11.3 - - - +
685A SER* 1.3 75.0 + - - +
687A VAL* 1.3 81.8 + - - +
689A SER* 2.3 26.0 + - - +
690A ASP* 2.4 43.1 + - - +
693A GLN* 4.4 6.2 + - - +
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Residues in contact with VAL 687 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589A THR* 3.6 33.9 - - + +
592A ARG* 4.5 24.5 - - + -
683A THR* 2.7 27.6 + - - +
684A TYR* 3.4 13.0 - - - +
686A GLU* 1.3 86.5 + - - +
688A LYS* 1.3 60.0 + - - +
690A ASP* 2.7 9.2 + - + +
691A LEU* 2.5 38.9 + - + +
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Residues in contact with LYS 688 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582A THR* 5.8 2.9 - - - -
586A LEU* 4.4 11.4 - - + +
684A TYR* 2.7 59.6 + - + +
685A SER* 4.5 2.2 - - - +
687A VAL* 1.3 75.2 - - - +
689A SER* 1.3 56.2 + - - +
691A LEU* 3.2 39.2 - - + +
692A ALA* 3.1 22.8 + - - +
695A LYS* 5.3 4.0 - - - +
596B ASP* 5.0 5.1 + - - +
682B ASP* 5.1 4.1 + - + +
683B THR* 5.9 4.9 - - - +
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Residues in contact with SER 689 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
685A SER 2.7 19.8 + - - -
686A GLU* 2.3 30.7 + - - +
688A LYS* 1.3 74.9 - - - +
690A ASP* 1.3 52.4 + - - +
692A ALA* 3.2 9.8 + - - +
693A GLN* 2.7 37.7 + - - +
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Residues in contact with ASP 690 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
686A GLU* 2.4 39.8 + - - +
687A VAL* 2.7 20.1 + - + +
689A SER* 1.3 65.1 - - - +
691A LEU* 1.3 60.2 + - - +
692A ALA 3.0 1.3 - - - -
693A GLN* 2.2 57.7 + - - +
694A GLN* 3.0 14.2 + - - +
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Residues in contact with LEU 691 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582A THR* 5.8 3.8 - - + -
585A GLN* 4.9 14.6 - - + +
586A LEU* 3.5 31.2 - - + -
589A THR* 4.7 7.6 - - + -
687A VAL* 2.5 16.3 + - + +
688A LYS* 3.2 48.7 - - + +
690A ASP* 1.3 73.9 + - - +
692A ALA* 1.3 57.5 + - + +
693A GLN 3.4 0.2 - - - -
694A GLN* 3.2 26.6 + - - +
695A LYS* 3.1 43.4 - - - +
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Residues in contact with ALA 692 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
688A LYS* 3.1 17.2 + - - +
689A SER* 3.2 15.9 - - - +
690A ASP 3.0 0.6 - - - -
691A LEU* 1.3 80.8 - - + +
693A GLN* 1.3 55.5 + - - +
694A GLN 3.3 2.2 - - - -
695A LYS* 3.0 38.4 + - + +
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Residues in contact with GLN 693 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
686A GLU* 4.4 7.2 + - - +
689A SER* 2.7 17.4 + - - +
690A ASP* 2.2 50.9 + - - +
692A ALA* 1.3 70.6 - - - +
694A GLN* 1.3 59.5 + - - +
695A LYS 3.3 3.9 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il