Contacts of the helix formed by residues 655 - 693 (chain C) in PDB entry 5MKF
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 655 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006B PX6 3.2 93.5 + - + +
1008B PLM 5.2 17.9 - - + +
653C ASN* 3.3 4.5 + - - +
654C ARG* 1.3 79.9 - - - +
656C LEU* 1.3 67.9 + - + +
658C PRO* 4.4 1.7 - - - +
659C ILE* 3.2 23.9 + - + +
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Residues in contact with LEU 656 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
560B ASN* 3.3 32.5 - - + +
564B VAL* 5.0 10.1 - - + -
1006B PX6 5.0 14.1 - - + -
1007B PLM 6.4 0.9 - - + -
614C LEU* 6.6 0.2 - - + -
618C VAL* 3.6 29.2 - - + -
619C PHE* 4.7 1.1 - - + -
653C ASN* 3.3 32.3 + - + +
655C VAL* 1.3 84.2 - - + +
657C GLY* 1.3 58.5 + - - +
658C PRO 3.0 1.8 - - - -
659C ILE* 2.2 47.2 + - + -
660C TYR* 2.8 15.0 + - + +
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Residues in contact with GLY 657 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
619C PHE* 3.5 28.6 - - - -
646C PHE* 4.8 0.6 - - - -
649C ILE* 3.5 19.3 - - - +
653C ASN 2.9 14.5 + - - -
656C LEU* 1.3 72.3 - - - +
658C PRO* 1.3 66.6 - - - +
660C TYR* 4.1 1.1 - - - +
661C PHE* 3.1 26.7 + - - +
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Residues in contact with PRO 658 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
634B PHE* 3.3 40.4 - - + -
1008B PLM 4.8 12.1 - - + -
646C PHE* 5.1 3.6 - - + -
649C ILE* 4.9 3.1 - - + -
650C GLU* 4.8 15.9 - - + -
653C ASN 3.5 4.9 - - - +
654C ARG* 3.0 29.2 - - - +
655C VAL 4.4 2.9 - - - +
656C LEU 2.8 1.3 - - - -
657C GLY* 1.3 88.8 - - - +
659C ILE* 1.3 54.9 + - - +
661C PHE* 4.6 2.0 - - + -
662C THR* 2.5 41.1 + - - -
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Residues in contact with ILE 659 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1006B PX6 4.8 44.2 - - + -
1007B PLM 4.9 16.1 - - + +
1008B PLM 5.3 20.9 - - + -
655C VAL* 3.2 19.1 - - + +
656C LEU* 2.2 47.1 + - + +
658C PRO* 1.3 71.1 - - + +
660C TYR* 1.3 54.7 + - - +
662C THR* 4.4 4.5 - - - -
663C THR* 2.7 52.0 + - + +
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Residues in contact with TYR 660 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007B PLM 5.5 4.3 - - - -
611C TYR* 3.3 48.7 - + + +
614C LEU* 4.4 15.3 - - + -
615C ALA* 4.4 14.0 - - + +
619C PHE* 3.9 34.3 - + + -
626C PHE* 4.8 14.6 - + - -
636C GLN* 4.1 25.3 + - - +
639C ILE* 5.5 11.0 - - + +
649C ILE* 5.6 4.9 - - + -
656C LEU* 2.8 14.2 + - + +
657C GLY 4.1 1.1 - - - +
659C ILE* 1.3 78.3 - - + +
661C PHE* 1.3 81.3 + + + +
663C THR* 2.6 23.1 + - - -
664C PHE* 2.8 24.7 + + + +
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Residues in contact with PHE 661 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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634B PHE* 4.7 6.7 - + + -
637B PHE* 4.2 24.9 - + + -
638B ARG* 4.8 11.0 - - + -
641B LEU* 4.4 21.3 - - + -
639C ILE* 4.6 22.2 - - + -
644C ILE* 5.1 9.4 - - + -
646C PHE* 3.6 40.2 - + + -
649C ILE* 5.2 5.4 - - + -
657C GLY 3.1 18.5 + - - +
658C PRO 4.3 0.4 - - - -
660C TYR* 1.3 90.1 - + + +
662C THR* 1.3 76.5 + - - +
664C PHE* 3.1 6.7 + + - +
665C VAL* 3.0 41.6 + - + +
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Residues in contact with THR 662 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
634B PHE* 3.2 28.6 - - + -
637B PHE* 4.2 26.3 - - + -
1008B PLM 4.2 36.9 - - + +
658C PRO 2.5 27.3 + - - -
659C ILE* 4.3 4.3 - - - -
661C PHE* 1.3 78.4 - - - +
663C THR* 1.3 64.9 + - - +
665C VAL* 3.2 7.3 - - - +
666C PHE* 3.1 21.1 + - + +
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Residues in contact with THR 663 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1007B PLM 4.5 21.3 - - + +
1008B PLM 5.0 17.5 - - + -
611C TYR* 3.8 20.6 - - - -
659C ILE* 2.7 27.0 + - + +
660C TYR* 2.6 22.0 + - - -
662C THR* 1.3 76.3 - - - +
664C PHE* 1.3 54.8 + - - +
666C PHE* 2.8 8.2 + - - +
667C PHE* 2.7 44.2 + - + +
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Residues in contact with PHE 664 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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608C PHE* 5.3 3.8 - + - -
611C TYR* 3.9 38.6 - + + -
636C GLN* 3.4 44.6 - - + -
639C ILE* 3.8 30.1 - - + -
640C ILE* 3.7 20.0 - - + -
660C TYR* 2.8 27.7 + + + +
661C PHE* 3.6 8.1 - + - +
663C THR* 1.3 80.4 + - - +
665C VAL* 1.3 79.9 + - + +
667C PHE 4.6 0.2 - - - +
668C MET* 2.8 49.0 + - + +
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Residues in contact with VAL 665 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
637B PHE* 4.2 24.9 - - + -
640B ILE* 6.3 1.3 - - + -
641B LEU* 3.5 44.9 - - + -
661C PHE* 3.0 24.3 + - + +
662C THR* 3.2 17.9 - - - +
664C PHE* 1.3 85.8 - - + +
666C PHE* 1.3 69.4 + - - +
669C PHE* 2.9 30.3 - - + +
670C PHE* 4.4 6.0 - - + -
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Residues in contact with PHE 666 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597B LEU* 6.0 5.8 - - + -
601B ALA* 4.6 18.4 - - + -
604B PHE* 5.6 9.4 - + - -
605B PHE* 6.2 3.4 - + - -
637B PHE* 5.1 14.6 - + + -
676B PHE* 5.3 5.8 - + - -
1008B PLM 4.1 36.6 - - + -
662C THR* 3.1 16.2 + - + +
663C THR* 2.8 12.9 + - - +
665C VAL* 1.3 79.3 - - - +
667C PHE* 1.3 81.4 + + - +
670C PHE* 2.7 72.9 + + + +
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Residues in contact with PHE 667 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1007B PLM 3.5 58.1 - - + -
1008B PLM 5.1 9.2 - - + -
607C ILE* 6.3 2.0 - - + -
611C TYR* 3.5 25.1 - + + +
663C THR* 2.7 23.1 + - + +
664C PHE 4.3 0.4 - - - +
666C PHE* 1.3 99.7 - + - +
668C MET* 1.3 53.0 + - - +
670C PHE* 2.6 6.9 + - + -
671C ILE* 2.2 45.7 + - + +
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Residues in contact with MET 668 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C PHE* 4.7 9.8 - - + -
607C ILE* 6.5 0.2 - - - -
608C PHE* 5.9 0.4 - - + -
611C TYR* 5.7 3.5 - - + -
640C ILE* 4.5 9.6 - - + -
664C PHE* 2.8 50.8 + - + +
667C PHE* 1.3 75.3 - - - +
669C PHE* 1.3 56.5 + - - +
671C ILE* 3.3 12.7 - - + +
672C LEU* 2.9 35.2 + - - +
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Residues in contact with PHE 669 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1014A CA 4.3 19.1 - - - -
640B ILE* 5.2 7.4 - - + -
641B LEU* 3.9 28.7 - - + -
669B PHE* 5.5 7.0 - + - -
672B LEU* 4.8 18.2 - - + -
640C ILE* 4.3 22.2 - - + +
664C PHE 3.7 0.4 + - - -
665C VAL* 2.9 27.6 + - + +
667C PHE 3.1 0.4 - - - -
668C MET* 1.3 80.4 - - - +
670C PHE* 1.3 82.2 + + - +
672C LEU* 3.7 27.4 - - + +
673C LEU* 3.3 22.0 - - + +
669D PHE* 5.5 6.7 - + - -
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Residues in contact with PHE 670 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604B PHE* 5.3 10.5 - + - -
637B PHE* 5.7 7.6 - + - -
640B ILE* 6.0 4.9 - - + -
672B LEU* 5.1 12.3 - - + -
676B PHE* 3.5 39.7 - + + -
680B ILE* 4.1 5.5 - - - +
665C VAL* 4.5 6.7 - - + -
666C PHE* 2.7 64.3 + + + +
667C PHE* 2.6 10.1 + - + +
669C PHE* 1.3 102.0 - + - +
671C ILE* 1.3 59.0 + - - +
672C LEU 3.6 0.2 - - - -
673C LEU* 3.6 23.1 - - + +
674C ASN* 3.9 7.3 + - - +
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Residues in contact with ILE 671 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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590B MET* 3.6 36.3 - - + -
603C MET* 5.4 5.4 - - + -
604C PHE* 4.1 24.9 - - + -
607C ILE* 5.4 7.6 - - + -
667C PHE* 2.2 32.7 + - + +
668C MET* 3.3 20.2 - - - +
670C PHE* 1.3 69.2 - - - +
672C LEU* 1.3 62.5 + - - +
673C LEU 3.1 1.6 - - - -
674C ASN* 2.7 36.2 + - + +
675C MET* 3.3 19.9 + - + +
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Residues in contact with LEU 672 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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604C PHE* 5.1 8.7 - - + -
640C ILE* 4.0 23.1 - - + -
668C MET 2.9 22.8 + - - +
669C PHE* 3.7 37.7 - - + +
671C ILE* 1.3 80.3 - - + +
673C LEU* 1.3 91.7 + - + +
676C PHE* 3.1 51.8 + - + +
677C LEU* 4.9 0.3 - - - +
669D PHE* 4.8 15.7 - - + -
670D PHE* 5.1 9.6 - - + -
673D LEU* 5.1 8.9 - - + +
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Residues in contact with LEU 673 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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672B LEU* 5.1 8.3 - - + +
673B LEU* 6.4 0.2 - - + -
676B PHE* 3.7 34.8 - - + -
677B LEU* 3.4 34.8 - - + -
680B ILE* 3.9 4.4 - - + +
669C PHE* 3.3 30.7 - - + +
670C PHE* 3.6 21.8 - - + +
672C LEU* 1.3 90.4 - - + +
674C ASN* 1.3 67.4 + - - +
677C LEU* 3.1 29.8 + - + +
673D LEU* 6.4 0.4 - - + -
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Residues in contact with ASN 674 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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590B MET* 2.4 44.1 - - - +
593B CYS* 4.2 8.3 - - - +
680B ILE* 3.2 47.8 - - + +
684B TYR* 5.7 3.5 - - - +
670C PHE 4.1 2.5 - - - +
671C ILE* 2.7 23.1 + - + +
673C LEU* 1.3 78.2 - - - +
675C MET* 1.3 81.7 + - - +
678C ALA* 3.8 12.5 + - - +
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Residues in contact with MET 675 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586B LEU 5.4 1.8 - - - +
589B THR* 4.9 5.6 - - - +
590B MET* 3.5 27.4 - - + +
684B TYR* 6.2 3.4 - - + -
597C LEU* 5.8 1.3 - - + +
600C PHE* 3.3 46.2 - - + -
603C MET* 3.8 14.4 - - + -
604C PHE* 6.0 2.5 - - + -
671C ILE* 3.3 16.2 + - + +
674C ASN* 1.3 118.9 - - - +
676C PHE* 1.3 75.3 + - + +
679C ILE* 3.0 40.4 + - + +
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Residues in contact with PHE 676 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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597C LEU* 4.7 29.6 - - + -
600C PHE* 5.3 1.8 - + - -
601C ALA* 6.0 3.6 - - + -
604C PHE* 4.9 23.6 - + + -
672C LEU* 3.1 33.6 + - + +
673C LEU 3.4 0.4 + - - -
674C ASN 3.3 1.0 - - - -
675C MET* 1.3 87.0 - - + +
677C LEU* 1.3 56.9 + - + +
679C ILE* 3.5 0.7 - - - +
680C ILE* 2.6 47.4 + - + +
666D PHE* 5.2 5.2 - + - -
670D PHE* 3.5 48.7 - + + -
673D LEU* 3.6 29.8 - - + -
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Residues in contact with LEU 677 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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677B LEU* 3.7 37.0 - - + -
680B ILE* 6.2 0.7 - - + -
672C LEU* 4.9 0.4 - - + +
673C LEU* 3.1 23.6 + - + +
676C PHE* 1.3 80.1 - - + +
678C ALA* 1.3 52.9 + - - +
680C ILE* 3.0 8.8 + - + +
681C ASN* 2.5 38.5 + - - +
673D LEU* 3.4 48.5 - - + +
677D LEU* 3.7 28.9 - - + -
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Residues in contact with ALA 678 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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680B ILE* 4.4 5.5 - - + +
681B ASN* 3.2 47.9 + - - +
684B TYR* 4.4 14.4 - - + -
674C ASN* 3.8 14.5 + - - +
675C MET 4.7 0.2 - - - +
676C PHE 3.4 0.2 - - - -
677C LEU* 1.3 77.1 - - - +
679C ILE* 1.3 56.5 + - + +
681C ASN* 2.4 23.9 + - - +
682C ASP* 2.8 17.8 + - - +
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Residues in contact with ILE 679 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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586B LEU* 5.6 2.9 - - + -
589B THR* 5.9 0.9 - - - +
684B TYR* 3.5 35.9 - - + +
593C CYS* 5.2 4.4 - - + +
596C ASP* 3.2 33.9 - - + +
597C LEU* 5.3 13.9 - - + -
600C PHE* 5.3 9.0 - - + -
675C MET* 3.0 48.2 + - + +
676C PHE* 3.2 1.7 + - - +
678C ALA* 1.3 74.8 - - + +
680C ILE* 1.3 55.9 + - - +
682C ASP* 2.6 22.4 - - - +
683C THR* 3.6 12.9 + - + +
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Residues in contact with ILE 680 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593C CYS* 5.8 6.3 - - + -
597C LEU* 5.6 9.4 - - + -
676C PHE* 2.6 35.1 + - + +
677C LEU* 3.0 13.0 - - + +
679C ILE* 1.3 72.6 - - - +
681C ASN* 1.3 69.5 + - - +
683C THR* 3.1 17.8 + - - -
684C TYR* 3.7 6.6 + - - +
670D PHE 4.1 6.7 - - - +
673D LEU* 4.0 14.4 - - + +
674D ASN* 3.1 71.5 - - + +
677D LEU* 6.2 0.4 - - + -
678D ALA* 4.4 5.4 - - + +
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Residues in contact with ASN 681 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1012A CA 2.6 29.5 - - - -
681B ASN* 3.1 10.1 + - - +
677C LEU 2.5 15.7 + - - +
678C ALA* 2.4 17.9 + - - +
680C ILE* 1.3 74.5 - - - +
682C ASP* 1.3 68.8 + - - +
684C TYR* 3.2 3.8 + - - +
685C SER* 3.1 22.9 + - - +
678D ALA* 3.1 38.7 + - + +
681D ASN* 3.1 12.7 + - - +
682D ASP* 5.0 3.0 - - - +
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Residues in contact with ASP 682 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
681B ASN* 5.0 2.9 - - - +
684B TYR* 3.0 34.9 + - + -
685B SER* 5.2 13.7 - - - -
688B LYS* 5.0 5.0 + - + +
678C ALA 2.8 13.0 + - - +
679C ILE* 2.6 26.5 - - - +
681C ASN* 1.3 72.6 - - - +
683C THR* 1.3 80.2 + - - +
685C SER* 2.2 42.3 + - - -
686C GLU* 2.8 7.8 + - - +
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Residues in contact with THR 683 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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688B LYS* 5.9 4.7 - - - +
589C THR 5.5 1.7 + - - -
592C ARG* 5.3 12.3 - - + -
593C CYS* 4.5 23.9 - - - +
596C ASP* 5.9 4.9 - - + +
679C ILE* 3.6 12.7 + - + +
680C ILE* 3.1 13.2 + - - -
682C ASP* 1.3 96.4 + - - +
684C TYR* 1.3 58.4 + - - +
686C GLU* 3.0 9.7 + - - +
687C VAL* 2.7 42.3 + - - +
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Residues in contact with TYR 684 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586C LEU* 3.4 26.2 - - + +
589C THR* 3.7 36.1 - - + -
680C ILE 3.7 6.3 + - - +
681C ASN* 3.2 7.5 + - - +
682C ASP 3.1 1.0 - - - -
683C THR* 1.3 81.8 + - - +
685C SER* 1.3 59.9 + - - +
687C VAL* 3.5 4.9 - - - -
688C LYS* 2.7 66.9 + - + +
596D ASP* 3.5 9.9 + - - -
674D ASN* 5.7 3.1 - - - +
675D MET* 6.1 3.8 - - + -
678D ALA* 4.5 8.3 - - + -
679D ILE* 3.5 35.9 - - + -
682D ASP* 3.0 30.6 + - + -
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Residues in contact with SER 685 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
681C ASN* 3.1 17.1 + - - -
682C ASP* 2.2 38.5 + - - -
684C TYR* 1.3 78.5 - - - +
686C GLU* 1.3 49.2 + - - +
688C LYS* 4.5 2.2 - - - +
689C SER* 2.7 34.5 + - - -
682D ASP* 5.2 13.0 - - - -
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Residues in contact with GLU 686 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
682C ASP 2.8 11.8 + - - +
683C THR* 3.3 11.6 - - - +
685C SER* 1.3 74.1 + - - +
687C VAL* 1.3 81.3 + - - +
689C SER* 2.3 26.7 + - - +
690C ASP* 2.4 43.2 + - - +
693C GLN* 4.4 6.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 687 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
589C THR* 3.6 32.5 - - + -
592C ARG* 4.5 25.1 - - + -
683C THR* 2.7 27.2 + - - +
684C TYR* 3.4 13.0 - - - +
686C GLU* 1.3 85.7 + - - +
688C LYS* 1.3 59.3 + - - +
690C ASP* 2.7 8.8 + - + +
691C LEU* 2.5 39.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 688 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582C THR* 5.8 2.5 - - - -
586C LEU* 4.4 10.5 - - + +
684C TYR* 2.7 58.7 + - + +
685C SER* 4.5 2.5 - - - +
687C VAL* 1.3 75.2 - - - +
689C SER* 1.3 55.5 + - - +
691C LEU* 3.2 40.3 - - + +
692C ALA* 3.1 23.5 + - - +
695C LYS* 5.3 4.7 - - - +
596D ASP* 5.0 6.1 + - - +
682D ASP* 5.1 4.5 + - + +
683D THR* 5.9 4.4 - - - +
----------------------------------------------------------
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Residues in contact with SER 689 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
685C SER 2.7 20.2 + - - -
686C GLU* 2.3 30.3 + - - +
688C LYS* 1.3 77.2 - - - +
690C ASP* 1.3 52.0 + - - +
692C ALA* 3.2 10.0 + - - +
693C GLN* 2.7 38.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 690 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
686C GLU* 2.4 39.3 + - - +
687C VAL* 2.7 20.0 + - - +
689C SER* 1.3 64.8 - - - +
691C LEU* 1.3 61.0 + - - +
692C ALA 3.0 1.3 - - - -
693C GLN* 2.2 57.9 + - - +
694C GLN* 3.0 14.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 691 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582C THR* 5.8 3.6 - - + -
585C GLN* 4.9 14.8 - - + +
586C LEU* 3.5 31.2 - - + -
589C THR* 4.7 8.3 - - + -
687C VAL 2.5 15.0 + - - +
688C LYS* 3.2 48.7 - - + +
690C ASP* 1.3 75.2 + - - +
692C ALA* 1.3 57.2 + - + +
694C GLN* 3.2 26.6 + - - +
695C LYS* 3.1 42.6 - - - +
----------------------------------------------------------
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Residues in contact with ALA 692 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
688C LYS* 3.1 16.0 + - - +
689C SER* 3.2 15.7 - - - +
690C ASP 3.0 0.6 - - - -
691C LEU* 1.3 79.9 - - + +
693C GLN* 1.3 54.6 + - - +
694C GLN 3.3 2.5 - - - -
695C LYS* 3.0 37.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 693 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
686C GLU* 4.4 6.6 + - - +
689C SER* 2.7 16.4 + - - +
690C ASP* 2.2 51.4 + - - +
692C ALA* 1.3 70.7 - - - +
694C GLN* 1.3 60.8 - - - +
695C LYS 3.3 3.3 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il