Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1J entry

There are 10 chains in PDB entry 1M1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27GLU 218
B
 ILE 63ASP 464
C
 THR 4SER 393
D
 SER 27PHE 220
E
 ILE 63PRO 463
F
 ARG 5SER 393
G
 GLY 1PRO 4
H
 GLY 1PRO 4
I
 GLY 1PRO 4
J
 GLY 1PRO 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 1M1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 80Right-handed alpha
Helix 2
2
A
82 161Right-handed alpha
Helix 3
3
A
179 190Right-handed alpha
Helix 4
4
B
85 164Right-handed alpha
Helix 5
5
B
164 198Right-handed alpha
Helix 6
6
B
215 222Right-handed alpha
Helix 7
7
B
248 252Right-handed 310
Helix 8
8
B
270 277Right-handed alpha
Helix 9
9
B
299 308Right-handed alpha
Helix 10
10
B
337 341Right-handed 310
Helix 11
11
B
355 360Right-handed alpha
Helix 12
12
B
366 371Right-handed alpha
Helix 13
13
B
397 402Right-handed alpha
Helix 14
14
B
427 431Right-handed 310
Helix 15
15
B
442 446Right-handed alpha
Helix 16
16
C
12 16Right-handed 310
Helix 17
17
C
21 68Right-handed alpha
Helix 18
18
C
78 96Right-handed alpha
Helix 19
19
C
96 133Right-handed alpha
Helix 20
20
C
152 158Right-handed alpha
Helix 21
21
C
207 214Right-handed alpha
Helix 22
22
C
229 238Right-handed alpha
Helix 23
23
C
288 292Right-handed 310
Helix 24
24
C
300 305Right-handed 310
Helix 25
25
C
325 331Right-handed alpha
Helix 26
26
C
390 393Right-handed 310
Helix 27
27
D
51 55Right-handed 310
Helix 28
28
D
74 79Right-handed alpha
Helix 29
29
D
81 161Right-handed alpha
Helix 30
30
D
177 192Right-handed alpha
Helix 31
31
E
83 90Right-handed alpha
Helix 32
32
E
99 103Right-handed 310
Helix 33
33
E
114 154Right-handed alpha
Helix 34
34
E
156 165Right-handed alpha
Helix 35
35
E
165 198Right-handed alpha
Helix 36
36
E
215 222Right-handed alpha
Helix 37
37
E
270 277Right-handed alpha
Helix 38
38
E
299 308Right-handed alpha
Helix 39
39
E
337 341Right-handed 310
Helix 40
40
E
355 360Right-handed alpha
Helix 41
41
E
366 371Right-handed alpha
Helix 42
42
E
397 403Right-handed alpha
Helix 43
43
E
442 446Right-handed alpha
Helix 44
44
F
34 38Right-handed 310
Helix 45
45
F
42 58Right-handed alpha
Helix 46
46
F
63 68Right-handed alpha
Helix 47
47
F
78 97Right-handed alpha
Helix 48
48
F
98 134Right-handed alpha
Helix 49
49
F
152 158Right-handed alpha
Helix 50
50
F
207 214Right-handed alpha
Helix 51
51
F
229 238Right-handed alpha
Helix 52
52
F
288 292Right-handed 310
Helix 53
53
F
300 305Right-handed 310
Helix 54
54
F
325 330Right-handed alpha
Helix 55
55
F
390 393Right-handed 310
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There are 21 sheets in PDB entry 1M1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
E
79 82anti-parallel
Strand 3
E
70 71anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
79 82anti-parallel
Strand 3
D
45 46anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
C
140 141parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 283first strand
Strand 2
C
257 263anti-parallel
Strand 3
C
244 251anti-parallel
Strand 4
C
381 388anti-parallel
Strand 5
C
190 197anti-parallel
Strand 6
C
178 184anti-parallel
Strand 7
C
165 169anti-parallel
Strand 8
C
145 150parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
280 283first strand
Strand 2
C
257 263anti-parallel
Strand 3
C
244 251anti-parallel
Strand 4
C
381 388anti-parallel
Strand 5
C
190 197anti-parallel
Strand 6
C
226 227anti-parallel
Strand 7
C
215 218anti-parallel
Strand 8
B
208 209anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 351first strand
Strand 2
B
325 335anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
453 460anti-parallel
Strand 5
B
254 260anti-parallel
Strand 6
B
241 246anti-parallel
Strand 7
B
228 232anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 351first strand
Strand 2
B
325 335anti-parallel
Strand 3
B
312 319anti-parallel
Strand 4
B
453 460anti-parallel
Strand 5
B
254 260anti-parallel
Strand 6
B
296 297anti-parallel
Strand 7
B
278 279anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
292 293anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
B
440 441anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
F
16 20anti-parallel
Strand 3
F
10 12anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
276 277anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 343first strand
Strand 2
C
368 369anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
203 204first strand
Strand 2
F
140 141parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
280 283first strand
Strand 2
F
257 263anti-parallel
Strand 3
F
244 251anti-parallel
Strand 4
F
381 388anti-parallel
Strand 5
F
190 197anti-parallel
Strand 6
F
178 184anti-parallel
Strand 7
F
165 169anti-parallel
Strand 8
F
145 150parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
280 283first strand
Strand 2
F
257 263anti-parallel
Strand 3
F
244 251anti-parallel
Strand 4
F
381 388anti-parallel
Strand 5
F
190 197anti-parallel
Strand 6
F
226 227anti-parallel
Strand 7
F
215 218anti-parallel
Strand 8
E
208 209anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 351first strand
Strand 2
E
325 335anti-parallel
Strand 3
E
312 319anti-parallel
Strand 4
E
453 460anti-parallel
Strand 5
E
254 260anti-parallel
Strand 6
E
241 246anti-parallel
Strand 7
E
228 232anti-parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 351first strand
Strand 2
E
325 335anti-parallel
Strand 3
E
312 319anti-parallel
Strand 4
E
453 460anti-parallel
Strand 5
E
254 260anti-parallel
Strand 6
E
296 297anti-parallel
Strand 7
E
278 279anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
282 283first strand
Strand 2
E
292 293anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
414 415first strand
Strand 2
E
440 441anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
266 267first strand
Strand 2
F
276 277anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
342 343first strand
Strand 2
F
368 369anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il