Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDE entry

There are 3 chains in PDB entry 2VDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23LEU 451
B
 GLU 23LEU 451
C
 GLU 23LEU 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
36 58Right-handed alpha
Helix 3
3
A
59 61Right-handed 310
Helix 4
4
A
99 168Right-handed alpha
Helix 5
5
A
172 209Right-handed alpha
Helix 6
6
A
230 242Right-handed alpha
Helix 7
7
A
242 264Right-handed alpha
Helix 8
8
A
265 267Right-handed 310
Helix 9
9
A
318 386Right-handed alpha
Helix 10
10
A
390 427Right-handed alpha
Helix 11
11
A
430 440Right-handed alpha
Helix 12
12
B
24 36Right-handed alpha
Helix 13
13
B
36 58Right-handed alpha
Helix 14
14
B
59 61Right-handed 310
Helix 15
15
B
99 168Right-handed alpha
Helix 16
16
B
172 209Right-handed alpha
Helix 17
17
B
230 242Right-handed alpha
Helix 18
18
B
242 264Right-handed alpha
Helix 19
19
B
265 267Right-handed 310
Helix 20
20
B
285 289Right-handed 310
Helix 21
21
B
318 386Right-handed alpha
Helix 22
22
B
390 427Right-handed alpha
Helix 23
23
B
430 440Right-handed alpha
Helix 24
24
C
24 36Right-handed alpha
Helix 25
25
C
36 58Right-handed alpha
Helix 26
26
C
59 61Right-handed 310
Helix 27
27
C
99 169Right-handed alpha
Helix 28
28
C
172 209Right-handed alpha
Helix 29
29
C
230 242Right-handed alpha
Helix 30
30
C
242 264Right-handed alpha
Helix 31
31
C
265 267Right-handed 310
Helix 32
32
C
318 386Right-handed alpha
Helix 33
33
C
390 427Right-handed alpha
Helix 34
34
C
430 439Right-handed alpha
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There are 4 sheets in PDB entry 2VDE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
83 98anti-parallel
Strand 3
B
63 75anti-parallel
Strand 4
C
302 316anti-parallel
Strand 5
C
269 279anti-parallel
Strand 6
C
83 98anti-parallel
Strand 7
C
282 284anti-parallel
Strand 8
C
83 98anti-parallel
Strand 9
C
63 75anti-parallel
Strand 10
A
302 316anti-parallel
Strand 11
A
269 279anti-parallel
Strand 12
A
83 98anti-parallel
Strand 13
A
282 284anti-parallel
Strand 14
A
83 98anti-parallel
Strand 15
A
63 75anti-parallel
Strand 16
B
302 316anti-parallel
Strand 17
B
269 279anti-parallel
Strand 18
B
83 98anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
441 446anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
441 446anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 218first strand
Strand 2
C
441 446anti-parallel
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