Analysis of interatomic Contacts of Structural Units in PDB entry:
4PK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PK5 entry

There are 2 chains in PDB entry 4PK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLY 403
B
 SER 12GLY 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4PK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 35Right-handed 310
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
54 61Right-handed alpha
Helix 5
AA5
A
66 70Right-handed 310
Helix 6
AA6
A
72 93Right-handed alpha
Helix 7
AA7
A
104 118Right-handed alpha
Helix 8
AA8
A
125 130Right-handed alpha
Helix 9
AA9
A
144 146Right-handed 310
Helix 10
AB1
A
159 180Right-handed alpha
Helix 11
AB2
A
180 191Right-handed alpha
Helix 12
AB3
A
192 215Right-handed alpha
Helix 13
AB4
A
216 221Right-handed alpha
Helix 14
AB5
A
222 229Right-handed alpha
Helix 15
AB6
A
229 234Right-handed alpha
Helix 16
AB7
A
240 244Right-handed 310
Helix 17
AB8
A
263 266Right-handed 310
Helix 18
AB9
A
267 277Right-handed alpha
Helix 19
AC1
A
286 297Right-handed alpha
Helix 20
AC2
A
300 312Right-handed alpha
Helix 21
AC3
A
315 322Right-handed alpha
Helix 22
AC4
A
325 354Right-handed alpha
Helix 23
AC5
A
354 359Right-handed alpha
Helix 24
AC6
A
381 397Right-handed alpha
Helix 25
AC7
B
33 35Right-handed 310
Helix 26
AC8
B
36 45Right-handed alpha
Helix 27
AC9
B
45 52Right-handed alpha
Helix 28
AD1
B
53 62Right-handed alpha
Helix 29
AD2
B
66 70Right-handed 310
Helix 30
AD3
B
72 93Right-handed alpha
Helix 31
AD4
B
104 119Right-handed alpha
Helix 32
AD5
B
125 130Right-handed alpha
Helix 33
AD6
B
159 179Right-handed alpha
Helix 34
AD7
B
180 190Right-handed alpha
Helix 35
AD8
B
192 215Right-handed alpha
Helix 36
AD9
B
215 221Right-handed alpha
Helix 37
AE1
B
222 235Right-handed alpha
Helix 38
AE2
B
240 244Right-handed 310
Helix 39
AE3
B
263 266Right-handed 310
Helix 40
AE4
B
267 277Right-handed alpha
Helix 41
AE5
B
286 296Right-handed alpha
Helix 42
AE6
B
297 299Right-handed 310
Helix 43
AE7
B
300 313Right-handed alpha
Helix 44
AE8
B
315 323Right-handed alpha
Helix 45
AE9
B
325 354Right-handed alpha
Helix 46
AF1
B
356 360Right-handed 310
Helix 47
AF2
B
381 397Right-handed alpha
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There are 4 sheets in PDB entry 4PK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
247 249parallel
Strand 3
A
256 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
148 150anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
247 249parallel
Strand 3
B
256 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
148 149anti-parallel
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