107D Dna date Jan 17, 1995
title Solution Structure Of The Covalent Duocarmycin A-Dna Duplex
authors C.H.Lin, D.J.Patel
compound source
Molecule: Dna (5'-D(Cpcptptptptpc)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Dna (5'-D(Gpapapapapgpg)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
ligand DUO enzyme
Primary referenceSolution structure of the covalent duocarmycin A-DNA duplex complex., Lin CH, Patel DJ, J Mol Biol 1995 Apr 21;248(1):162-79. PMID:7731041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (107d.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 107D
  • CSU: Contacts of Structural Units for 107D
  • Retrieve 107D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 107D from S2C, [Save to disk]
    • View 107D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 107D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 107D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [107d] [107d_B] [107d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 107D
  • Community annotation for 107D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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