110D ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL date
authors Leonard, G.A., Hambley, T.W., McAuley-Hecht, K., Brown, T., Hunter, W.N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand DM1 enzyme
Primary referenceAnthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes., Leonard GA, Hambley TW, McAuley-Hecht K, Brown T, Hunter WN, Acta Crystallogr D Biol Crystallogr. 1993 Sep 1;49(Pt 5):458-67. PMID:15299505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (110d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 110D
  • CSU: Contacts of Structural Units for 110D
  • Likely Quarternary Molecular Structure file(s) for 110D
  • Structure Factors (6 Kb)
  • Retrieve 110D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 110D from S2C, [Save to disk]
  • Re-refined 110d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 110D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 110D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 110D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [110d_A] [110d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 110D
  • Community annotation for 110D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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