179D Dna date Jun 15, 1994
title Solution Structure Of The D(T-C-G-A) Duplex At Acidic Ph: A Stranded Helix Containing C+.C, G.G And A.A Pairs
authors Y.Wang, D.J.Patel
compound source
Molecule: Dna (5'-D(Tpcpgpa)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceSolution structure of the d(T-C-G-A) duplex at acidic pH. A parallel-stranded helix containing C+ .C, G.G and A.A pairs., Wang Y, Patel DJ, J Mol Biol 1994 Sep 30;242(4):508-26. PMID:7932707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (179d.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 179D
  • Retrieve 179D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 179D from S2C, [Save to disk]
    • View 179D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 179D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 179D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [179d_B] [179d_A] [179d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 179D
  • Community annotation for 179D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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