183D X-RAY STRUCTURE OF A DNA DECAMER CONTAINING 7, 8-DIHYDRO-8-OXOGUANINE date
authors Lipscomb, L.A., Peek, M.E., Morningstar, M.L., Verghis, S.M., Miller, E.M., Rich, A., Essigmann, J.M., Williams, L.D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 8OG enzyme
Primary referenceX-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine., Lipscomb LA, Peek ME, Morningstar ML, Verghis SM, Miller EM, Rich A, Essigmann JM, Williams LD, Proc Natl Acad Sci U S A 1995 Jan 31;92(3):719-23. PMID:7846041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (183d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 183D
  • CSU: Contacts of Structural Units for 183D
  • Likely Quarternary Molecular Structure file(s) for 183D
  • Retrieve 183D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 183D from S2C, [Save to disk]
    • View 183D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 183D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 183D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [183d] [183d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 183D
  • Community annotation for 183D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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