1A5D Eye Lens Protein date Feb 12, 1998
title Gammae Crystallin From Rat Lens
authors B.V.Norledge, R.Hay, O.A.Bateman, C.Slingsby, H.P.C.Driessen
compound source
Molecule: Gammae Crystallin
Chain: A, B
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Lens
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.760 43.710 107.440 90.00 108.54 90.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1A45, 1GCS
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTowards a molecular understanding of phase separation in the lens: a comparison of the X-ray structures of two high Tc gamma-crystallins, gammaE and gammaF, with two low Tc gamma-crystallins, gammaB and gammaD., Norledge BV, Hay RE, Bateman OA, Slingsby C, Driessen HP, Exp Eye Res 1997 Nov;65(5):609-30. PMID:9367641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1a5d.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1a5d.pdb2.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1A5D
  • Likely Quarternary Molecular Structure file(s) for 1A5D
  • Structure Factors (101 Kb)
  • Retrieve 1A5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A5D from S2C, [Save to disk]
  • Re-refined 1a5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1A5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1A5D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1A5D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a5da1, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1a5da2, region A:85-174 [Jmol] [rasmolscript] [script source]
        - Domain d1a5db1, region B:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d1a5db2, region B:85-174 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a5d_B] [1a5d_A] [1a5d]
  • SWISS-PROT database: [P02528]
  • Domain organization of [CRGE_RAT] by SWISSPFAM
  • Domain found in 1A5D: [XTALbg ] by SMART
    • Other resources with information on 1A5D
  • Community annotation for 1A5D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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