1AE1 Oxidoreductase date Oct 23, 1997
title Tropinone Reductase-I Complex With Nadp
authors K.Nakajima, A.Yamashita, H.Akama, T.Nakatsu, H.Kato, T.Hashimoto, J.Oda, Y.Yamada
compound source
Molecule: Tropinone Reductase-I
Chain: A, B
Ec: 1.1.1.236
Engineered: Yes
Organism_scientific: Datura Stramonium
Organism_common: Jimsonweed
Organism_taxid: 4076
Cell_line: Bl21
Organ: Cultured Root
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21d
Expression_system_plasmid: Pettr1
symmetry Space Group: P 21 21 2
R_factor 0.155 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.740 122.750 75.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand NAP enzyme Oxidoreductase E.C.1.1.1.236 BRENDA
related structures by homologous chain: 1IPE, 2AE1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of two tropinone reductases: different reaction stereospecificities in the same protein fold., Nakajima K, Yamashita A, Akama H, Nakatsu T, Kato H, Hashimoto T, Oda J, Yamada Y, Proc Natl Acad Sci U S A 1998 Apr 28;95(9):4876-81. PMID:9560196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1ae1.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (1ae1.pdb2.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 1AE1
  • CSU: Contacts of Structural Units for 1AE1
  • Likely Quarternary Molecular Structure file(s) for 1AE1
  • Structure Factors (135 Kb)
  • Retrieve 1AE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AE1 from S2C, [Save to disk]
  • Re-refined 1ae1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AE1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AE1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ae1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ae1b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ae1_A] [1ae1_B] [1ae1]
  • SWISS-PROT database: [P50162]
  • Domain organization of [TRN1_DATST] by SWISSPFAM
  • Other resources with information on 1AE1
  • Community annotation for 1AE1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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