1AVH Calcium Phospholipid Binding date Oct 17, 1991
title Crystal And Molecular Structure Of Human Annexin V After Ref Implications For Structure, Membrane Binding And Ion Channe Formation Of The Annexin Family Of Proteins
authors R.Huber, R.Berendes, A.Burger, M.Schneider, A.Karshikov, H.Luecke J.Roemisch, E.Paques
compound source
Molecule: Annexin V
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 63
R_factor 0.184 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.800 98.800 129.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, SO4 enzyme
related structures by homologous chain: 1AVR, 1SAV
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phospholipase inhibitor acti...


    • Primary referenceCrystal and molecular structure of human annexin V after refinement. Implications for structure, membrane binding and ion channel formation of the annexin family of proteins., Huber R, Berendes R, Burger A, Schneider M, Karshikov A, Luecke H, Romisch J, Paques E, J Mol Biol 1992 Feb 5;223(3):683-704. PMID:1311770
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1avh.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (1avh.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (1avh.pdb3.gz) 106 Kb
  • Biological Unit Coordinates (1avh.pdb4.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 1AVH
  • CSU: Contacts of Structural Units for 1AVH
  • Likely Quarternary Molecular Structure file(s) for 1AVH
  • Retrieve 1AVH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AVH from S2C, [Save to disk]
    • View 1AVH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AVH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AVH, from MSDmotif at EBI
  • Genome occurence of 1AVH's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1avha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1avhb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1avh_A] [1avh_B] [1avh]
  • SWISS-PROT database: [P08758]
  • Belongs to the annexin (annexin) family according to TCDB.
  • Domain organization of [ANXA5_HUMAN] by SWISSPFAM
  • Domain found in 1AVH: [ANX ] by SMART
    • Other resources with information on 1AVH
  • Community annotation for 1AVH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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