1AVK Oxidoreductase date Sep 16, 1997
title Crystal Structures Of The Copper-Containing Amine Oxidase Fr Arthrobacter Globiformis In The Holo-And Apo-Forms: Implica The Biogenesis Of Topa Quinone
authors M.C.J.Wilce, J.M.Guss, H.C.Freeman, K.Tanizawa, H.Yamaguchi
compound source
Molecule: Amine Oxidase
Chain: A
Synonym: Agao
Ec: 1.4.3.6
Engineered: Yes
Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Ppeao2
Expression_system_plasmid: Bl21
symmetry Space Group: C 1 2 1
R_factor 0.194 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.720 64.600 93.290 90.00 112.33 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1AV4, 1IVV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone., Wilce MC, Dooley DM, Freeman HC, Guss JM, Matsunami H, McIntire WS, Ruggiero CE, Tanizawa K, Yamaguchi H, Biochemistry 1997 Dec 23;36(51):16116-33. PMID:9405045
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (1avk.pdb1.gz) 200 Kb
  • CSU: Contacts of Structural Units for 1AVK
  • Likely Quarternary Molecular Structure file(s) for 1AVK
  • Structure Factors (205 Kb)
  • Retrieve 1AVK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AVK from S2C, [Save to disk]
  • Re-refined 1avk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1AVK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AVK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AVK, from MSDmotif at EBI
  • Genome occurence of 1AVK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1avk_1, region 212-628 [Jmol] [rasmolscript] [script source]
        - Domain d1avk_2, region 9-96 [Jmol] [rasmolscript] [script source]
        - Domain d1avk_3, region 97-211 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1avk_A] [1avk]
  • SWISS-PROT database: [P46881]
  • Domain organization of [PAOX_ARTGO] by SWISSPFAM
  • Other resources with information on 1AVK
  • Community annotation for 1AVK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1AVK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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