1BBD Immunoglobulin date May 05, 1992
title Three Dimensional Structure Of The Fab Fragment Of A Neutral Antibody To Human Rhinovirus Serotype 2
authors J.Tormo, D.Blaas, I.Fita
compound source
Molecule: Igg2a-Kappa 8f5 Fab (Light Chain)
Chain: L
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090

Molecule: Igg2a-Kappa 8f5 Fab (Heavy Chain)
Chain: H
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.700 86.800 128.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4 enzyme
related structures by homologous chain: 1A5F, 1GGC, 1GGI
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceThree-dimensional structure of the Fab fragment of a neutralizing antibody to human rhinovirus serotype 2., Tormo J, Stadler E, Skern T, Auer H, Kanzler O, Betzel C, Blaas D, Fita I, Protein Sci. 1992 Sep;1(9):1154-61. PMID:1338980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (1bbd.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1BBD
  • CSU: Contacts of Structural Units for 1BBD
  • Likely Quarternary Molecular Structure file(s) for 1BBD
  • Retrieve 1BBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BBD from S2C, [Save to disk]
    • View 1BBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BBD, from MSDmotif at EBI
  • Genome occurence of 1BBD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bbdh1, region H:1-119 [Jmol] [rasmolscript] [script source]
        - Domain d1bbdh2, region H:120-218 [Jmol] [rasmolscript] [script source]
        - Domain d1bbdl1, region L:1-114 [Jmol] [rasmolscript] [script source]
        - Domain d1bbdl2, region L:115-219 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bbd] [1bbd_L] [1bbd_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1BBD: [IG_like] [IGv ] by SMART
    • Other resources with information on 1BBD
  • Community annotation for 1BBD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BBD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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