1BFO	Antibody	date	May 20, 1998
title	Campath-1g Igg2b Rat Monoclonal Fab
authors	G.M.T.Cheetham, G.Hale, H.Waldmann, A.C.Bloomer
compound		source
Molecule: Campath-1g Antibody Chain: A, C, E, G Fragment: Fab Fragment		Organism_scientific: Rattus Rattus Organism_common: Black Rat Organism_taxid: 10117 Secretion: Ascitic Fluid
Molecule: Campath-1g Antibody Chain: B, D, F, H Fragment: Fab Fragment		Organism_scientific: Rattus Rattus Organism_common: Black Rat Organism_taxid: 10117 Secretion: Ascitic Fluid
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.280 108.150 166.670 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
related structures	by homologous chain: 1BQL, 1ETZ, 1I9J, 1MPA
Primary reference	Crystal structures of a rat anti-CD52 (CAMPATH-1) therapeutic antibody Fab fragment and its humanized counterpart., Cheetham GM, Hale G, Waldmann H, Bloomer AC, J Mol Biol 1998 Nov 20;284(1):85-99. PMID:9811544

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk] Biological Unit Coordinates (1bfo.pdb1.gz) 72 Kb Biological Unit Coordinates (1bfo.pdb2.gz) 72 Kb Biological Unit Coordinates (1bfo.pdb3.gz) 71 Kb Biological Unit Coordinates (1bfo.pdb4.gz) 72 Kb CSU: Contacts of Structural Units for 1BFO Likely Quarternary Molecular Structure file(s) for 1BFO Retrieve 1BFO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BFO from S2C, [Save to disk]

View 1BFO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BFO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BFO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1bfoa1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1bfoa2, region A:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1bfob1, region B:1-121 [Jmol] [rasmolscript] [script source]     - Domain d1bfob2, region B:122-216 [Jmol] [rasmolscript] [script source]     - Domain d1bfoc1, region C:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1bfoc2, region C:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1bfod1, region D:1-121 [Jmol] [rasmolscript] [script source]     - Domain d1bfod2, region D:122-216 [Jmol] [rasmolscript] [script source]     - Domain d1bfoe1, region E:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1bfoe2, region E:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1bfof1, region F:1-121 [Jmol] [rasmolscript] [script source]     - Domain d1bfof2, region F:122-216 [Jmol] [rasmolscript] [script source]     - Domain d1bfog1, region G:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1bfog2, region G:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1bfoh1, region H:1-121 [Jmol] [rasmolscript] [script source]     - Domain d1bfoh2, region H:122-216 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bfo_H] [1bfo_B] [1bfo_F] [1bfo_A] [1bfo] [1bfo_E] [1bfo_D] [1bfo_C] [1bfo_G] SWISS-PROT database: [P01835] Domain organization of [KACB_RAT] by SWISSPFAM Domains found in 1BFO: [IG_like] [IGv ] by SMART

Other resources with information on 1BFO

Community annotation for 1BFO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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