1BLN	Immune System	date	Jul 16, 1998
title	Anti-P-Glycoprotein Fab Mrk-16
authors	S.Vasudevan, T.Tsuruo, D.R.Rose
compound		source
Molecule: Protein (Monoclonal Antibody Mrk-16 (Light Chain) Chain: A, C Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Protein (Monoclonal Antibody Mrk-16 (Heavy Chain) Chain: B, D Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 1 21 1	R_factor 0.209 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.490 67.774 117.186 90.00 97.61 90.00
method	X-Ray Diffraction	resolution	2.80 Å
note	1BLN (Molecule of the Month:pdb123)
related structures	by homologous chain: 1AI1, 1IGT, 1MHP, 1TY3
Primary reference	Mode of binding of anti-P-glycoprotein antibody MRK-16 to its antigen. A crystallographic and molecular modeling study., Vasudevan S, Tsuruo T, Rose DR, J Biol Chem 1998 Sep 25;273(39):25413-9. PMID:9738009

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (1bln.pdb1.gz) 66 Kb Biological Unit Coordinates (1bln.pdb2.gz) 66 Kb CSU: Contacts of Structural Units for 1BLN Likely Quarternary Molecular Structure file(s) for 1BLN Retrieve 1BLN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1BLN from S2C, [Save to disk]

View 1BLN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1BLN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1BLN, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1blna1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1blna2, region A:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1blnb1, region B:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1blnb2, region B:114-227 [Jmol] [rasmolscript] [script source]     - Domain d1blnc1, region C:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1blnc2, region C:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1blnd1, region D:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1blnd2, region D:114-227 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1bln] [1bln_C] [1bln_D] [1bln_A] [1bln_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1BLN: [IG_like] [IGv ] by SMART

Other resources with information on 1BLN

Community annotation for 1BLN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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