1BO7 Transferase date Aug 10, 1998
title Thymidylate Synthase R179t Mutant
authors R.Morse, J.Finer-Moore, R.M.Stroud
compound source
Molecule: Protein (Thymidylate Synthase)
Chain: A
Ec: 2.1.1.45
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Casei
Organism_taxid: 1582
Strain: E. Coli Chi-2913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Chi-2913
Expression_system_plasmid: Pkptsd
Other_details: Synthetic Gene
symmetry Space Group: P 61 2 2
R_factor 0.201 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.700 78.700 240.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand U enzyme Transferase E.C.2.1.1.45 BRENDA
related structures by homologous chain: 1BP0, 1TSL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEnergetic contributions of four arginines to phosphate-binding in thymidylate synthase are more than additive and depend on optimization of "effective charge balance"., Morse RJ, Kawase S, Santi DV, Finer-Moore J, Stroud RM, Biochemistry 2000 Feb 8;39(5):1011-20. PMID:10653645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1bo7.pdb1.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 1BO7
  • CSU: Contacts of Structural Units for 1BO7
  • Likely Quarternary Molecular Structure file(s) for 1BO7
  • Retrieve 1BO7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BO7 from S2C, [Save to disk]
  • View 1BO7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 1BO7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BO7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bo7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bo7] [1bo7_A]
  • SWISS-PROT database: [P00469]
  • Domain organization of [TYSY_LACCA] by SWISSPFAM
  • Other resources with information on 1BO7
  • Community annotation for 1BO7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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