1BYV Hormone Growth Factor date Oct 16, 1998
title Glycosylated Eel Calcitonin
authors Y.Hashimoto, K.Toma, J.Nishikido, K.Yamamoto, K.Haneda, T.Inazu, K.G.Valentine, S.J.Opella
compound source
Molecule: Protein (Calcitonin)
Chain: A
Other_details: Synthetically Glycolylated At Asn3
 Organism_scientific: Anguilla Japonica
Organism_common: Japanese Eel
Organism_taxid: 7937
methodSolution NMR
ligand NAG, NH2 enzyme
related structures by homologous chain: 1BZB
Gene
Ontology
ChainFunctionProcessComponent
A
  • hormone activity


    • Primary referenceEffects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy., Hashimoto Y, Toma K, Nishikido J, Yamamoto K, Haneda K, Inazu T, Valentine KG, Opella SJ, Biochemistry 1999 Jun 29;38(26):8377-84. PMID:10387083
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1byv.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1BYV
  • CSU: Contacts of Structural Units for 1BYV
  • Original NMR restraints for 1BYV from PDB
  • Retrieve 1BYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BYV from S2C, [Save to disk]
    • View 1BYV in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BYV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BYV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1byva_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1byv_A] [1byv]
  • SWISS-PROT database: [P01262]
  • Domain organization of [CALC_ANGJA] by SWISSPFAM
  • Domain found in 1BYV: [CALCITONIN ] by SMART
    • Other resources with information on 1BYV
  • Community annotation for 1BYV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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