1CDM Calcium-Binding Protein date Oct 08, 1993
title Modulation Of Calmodulin Plasticity In Molecular Recognition Basis Of X-Ray Structures
authors W.E.Meador, F.A.Quiocho
compound source
Molecule: Peptide Calmodulin-Dependent Protein Kinase II
Chain: A
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913

Molecule: Calmodulin
Chain: B
Engineered: Yes
symmetry Space Group: C 2 2 21
R_factor 0.208 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.000 75.200 120.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme
related structures by homologous chain: 1CM4, 1LIN
Gene
Ontology
ChainFunctionProcessComponent
A
  • enzyme regulator activity


    • Primary referenceModulation of calmodulin plasticity in molecular recognition on the basis of x-ray structures., Meador WE, Means AR, Quiocho FA, Science 1993 Dec 10;262(5140):1718-21. PMID:8259515
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1cdm.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1CDM
  • CSU: Contacts of Structural Units for 1CDM
  • Likely Quarternary Molecular Structure file(s) for 1CDM
  • Retrieve 1CDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CDM from S2C, [Save to disk]
    • View 1CDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CDM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CDM, from MSDmotif at EBI
  • Genome occurence of 1CDM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cdma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cdm_A] [1cdm_B] [1cdm]
  • SWISS-PROT database: [P62157]
  • Domain organization of [CALM_BOVIN] by SWISSPFAM
  • Domain found in 1CDM: [EFh ] by SMART
    • Other resources with information on 1CDM
  • Community annotation for 1CDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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