1CLY	Immunoglobulin	date	Mar 15, 1995
title	Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96) Comple Lewis Y Nonoate Methyl Ester
authors	S.Sheriff, J.Bajorath
compound		source
Molecule: Igg Fab (Human Igg1, Kappa) Chain: L Fragment: Chimeric Fragment (Br96) Synonym: Cbr96 Fab (Immunoglobulin) Engineered: Yes Other_details: Complexed With Lewis Y Nonoate Methyl Ester		Fragment: Ch1, Igg1 Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Hybridoma Produced By Fusioning Balbc Splee With P2x63-Ag 8.653 Mouse Myeloma Cells. Human Constant Reg Introduced By Homologous Recombination;
Molecule: Igg Fab (Human Igg1, Kappa) Chain: H Fragment: Chimeric Fragment (Br96) Synonym: Cbr96 Fab (Immunoglobulin) Engineered: Yes Other_details: Complexed With Lewis Y Nonoate Methyl Ester		Fragment: Ch1, Igg1 Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Hybridoma Produced By Fusioning Balbc Splee With P2x63-Ag 8.653 Mouse Myeloma Cells. Human Constant Reg Introduced By Homologous Recombination
symmetry	Space Group: P 43 21 2	R_factor 0.238 R_Free 0.298
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.700 81.700 166.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	FUC, GAL, NAG, NON	enzyme
related structures	by homologous chain: 1MEL, 1Q1J, 1T4K
Gene Ontology	Chain Function Process Component L
Primary reference	The x-ray structure of an anti-tumour antibody in complex with antigen., Jeffrey PD, Bajorath J, Chang CY, Yelton D, Hellstrom I, Hellstrom KE, Sheriff S, Nat Struct Biol 1995 Jun;2(6):466-71. PMID:7664109

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1cly.pdb1.gz) 69 Kb LPC: Ligand-Protein Contacts for 1CLY CSU: Contacts of Structural Units for 1CLY Likely Quarternary Molecular Structure file(s) for 1CLY Structure Factors (151 Kb) Retrieve 1CLY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CLY from S2C, [Save to disk] Re-refined 1cly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1CLY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CLY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CLY, from MSDmotif at EBI Genome occurence of 1CLY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1clyh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1clyh2, region H:114-227 [Jmol] [rasmolscript] [script source]     - Domain d1clyl2, region L:109-214 [Jmol] [rasmolscript] [script source]     - Domain d1clyl1, region L:3-108 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cly_L] [1cly_H] [1cly] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1CLY: [IG_like] [IGv ] by SMART

Other resources with information on 1CLY

Community annotation for 1CLY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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