1CYG Glycosyltransferase date Feb 03, 1993
title Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
authors M.Kubota, Y.Matsuura, S.Sakai, Y.Katsube
compound source
Molecule: Cyclodextrin Glucanotransferase
Chain: A
Ec: 2.4.1.19
Engineered: Yes
 Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.500 88.000 78.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA enzyme Transferase E.C.2.4.1.19 BRENDA
related structures by homologous chain: 1CGV, 9CGT
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (1cyg.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1CYG
  • CSU: Contacts of Structural Units for 1CYG
  • Likely Quarternary Molecular Structure file(s) for 1CYG
  • Structure Factors (577 Kb)
  • Retrieve 1CYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CYG from S2C, [Save to disk]
  • Re-refined 1cyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1CYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1CYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CYG, from MSDmotif at EBI
  • Genome occurence of 1CYG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cyg_4, region 1-402 [Jmol] [rasmolscript] [script source]
        - Domain d1cyg_3, region 403-491 [Jmol] [rasmolscript] [script source]
        - Domain d1cyg_1, region 492-574 [Jmol] [rasmolscript] [script source]
        - Domain d1cyg_2, region 575-680 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cyg] [1cyg_A]
  • SWISS-PROT database: [P31797]
  • Domain organization of [CDGT_BACST] by SWISSPFAM
  • Domains found in 1CYG: [Aamy] [Aamy_C] [CBM_2 ] by SMART
    • Other resources with information on 1CYG
  • Community annotation for 1CYG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1CYG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science