1DUT	Aspartyl Protease	date	Sep 15, 1996
title	Fiv Dutp Pyrophosphatase
authors	G.S.Prasad, E.A.Stura, D.E.Mcree, G.S.Laco, C.Hasselkus-Light, J. C.D.Stout
compound		source
Molecule: Dutp Pyrophosphatase Chain: A, B Synonym: Dutpase, Deoxyuridine 5'-Triphosphate Nucleotidohy Ec: 3.6.1.23 Engineered: Yes		Organism_scientific: Feline Immunodeficiency Virus Organism_taxid: 11674 Strain: (Isolate Petaluma) Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: Tn5 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 63	R_factor 0.209 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.800 79.800 86.950 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MG	enzyme	Hydrolase E.C.3.6.1.23 BRENDA
related structures	by homologous chain: 1F7D, 1F7N
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus., Prasad GS, Stura EA, McRee DE, Laco GS, Hasselkus-Light C, Elder JH, Stout CD, Protein Sci 1996 Dec;5(12):2429-37. PMID:8976551

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1dut.pdb1.gz) 56 Kb Biological Unit Coordinates (1dut.pdb2.gz) 54 Kb LPC: Ligand-Protein Contacts for 1DUT CSU: Contacts of Structural Units for 1DUT Likely Quarternary Molecular Structure file(s) for 1DUT Retrieve 1DUT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DUT from S2C, [Save to disk]

View 1DUT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DUT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DUT, from MSDmotif at EBI Genome occurence of 1DUT's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1duta_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dutb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dut] [1dut_A] [1dut_B] SWISS-PROT database: [P16088] Domain organization of [POL_FIVPE] by SWISSPFAM

Other resources with information on 1DUT

Community annotation for 1DUT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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