1DX7 Light-Harvesting Protein date Dec 21, 1999
title Light-Harvesting Complex 1 Beta Subunit From Rhodobacter Sph
authors M.J.Conroy, W.Westerhuis, P.S.Parkes-Loach, P.A.Loach, C.N.Hunte M.P.Williamson
compound source
Molecule: Light Harvesting 1 B(B850b) Polypeptide
Chain: A
Synonym: Light-Harvesting Protein
Engineered: Yes
 Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Cellular_location: Membrane
Gene: Pufb, Ebl86_10065
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
Expression_system_cellular_location: Membrane
methodSolution NMR
related structures by homologous chain: 1JO5
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transporter, transf...


    • Primary referenceThe solution structure of Rhodobacter sphaeroides LH1beta reveals two helical domains separated by a more flexible region: structural consequences for the LH1 complex., Conroy MJ, Westerhuis WH, Parkes-Loach PS, Loach PA, Hunter CN, Williamson MP, J Mol Biol 2000 Apr 21;298(1):83-94. PMID:10756106
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1dx7.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1DX7
  • Original NMR restraints for 1DX7 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DX7 from S2C, [Save to disk]
    • View 1DX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DX7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DX7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dx7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dx7_A] [1dx7]
  • SWISS-PROT database: [P0C0Y1]
  • Domain organization of [LHB1_RHOSH] by SWISSPFAM
    • Other resources with information on 1DX7
  • Community annotation for 1DX7 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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