1DXW structure of hetero complex of non structural protein (NS) of hepatitis C virus (HCV) and synthetic peptidic compound date
authors Barbato, G., Cicero, D.O., Cordier, F., Narjes, F., Gerlach, B., Sambucini, S., Grzesiek, S., Matassa, V.G., Defrancesco, R., Bazzo, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand 2ZF, ZN enzyme
related structures by homologous chain: 1A1Q, 1RGQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibitor binding induces active site stabilization of the HCV NS3 protein serine protease domain., Barbato G, Cicero DO, Cordier F, Narjes F, Gerlach B, Sambucini S, Grzesiek S, Matassa VG, De Francesco R, Bazzo R, EMBO J 2000 Mar 15;19(6):1195-206. PMID:10716920
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (843 Kb) [Save to disk]
  • Biological Unit Coordinates (1dxw.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1DXW
  • CSU: Contacts of Structural Units for 1DXW
  • Original NMR restraints for 1DXW from PDB
  • Retrieve 1DXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DXW from S2C, [Save to disk]
    • View 1DXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DXW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DXW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dxwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dxw_B] [1dxw] [1dxw_A]
  • SWISS-PROT database: [Q8QW30]
  • Domain organization of [Q8QW30_9HEPC] by SWISSPFAM
    • Other resources with information on 1DXW
  • Community annotation for 1DXW at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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