1E0V Hydrolase date Apr 10, 2000
title Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A
authors V.Ducros, S.J.Charnock, U.Derewenda, Z.S.Derewenda, Z.Dauter, C.D F.Shareck, R.Morosoli, D.Kluepfel, G.J.Davies
compound source
Molecule: Endo-1,4-Beta-Xylanase A
Chain: A
Fragment: Catalytic Module, Residues 42-343
Synonym: Xylanase A, 1,4-Beta-D-Xylan Xylanohydrolase A, Xy
Ec: 3.2.1.8
Engineered: Yes
Other_details: Glycosyl Enxyme Intermediate. Covalent Link Glu 236 And The Substrate
Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
Expression_system: Streptomyces Lividans
Expression_system_taxid: 1916
Expression_system_strain: Iaf 19
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.870 46.270 87.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand BGC, G2F enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1E0X, 1NQ6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate specificity in glycoside hydrolase family 10. Structural and kinetic analysis of the Streptomyces lividans xylanase 10A., Ducros V, Charnock SJ, Derewenda U, Derewenda ZS, Dauter Z, Dupont C, Shareck F, Morosoli R, Kluepfel D, Davies GJ, J Biol Chem. 2000 Jul 28;275(30):23020-6. PMID:10930426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (1e0v.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1E0V
  • CSU: Contacts of Structural Units for 1E0V
  • Likely Quarternary Molecular Structure file(s) for 1E0V
  • Structure Factors (209 Kb)
  • Retrieve 1E0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E0V from S2C, [Save to disk]
  • Re-refined 1e0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e0va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e0v] [1e0v_A]
  • SWISS-PROT database: [P26514]
  • Domain organization of [XYNA_STRLI] by SWISSPFAM
  • Domain found in 1E0V: [Glyco_10 ] by SMART
  • Other resources with information on 1E0V
  • Community annotation for 1E0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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