1EJA Hydrolase Inhibitor date Mar 02, 2000
title Structure Of Porcine Trypsin Complexed With Bdellastasin, An Antistasin-Type Inhibitor
authors U.Rester, M.Moser, R.Huber, W.Bode
compound source
Molecule: Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Tissue: Pancreas
Other_details: Lyophilized Porcine Pancreatic B-Trypsin Typ 3.4.21.4) Purchased From Sigma.;

Molecule: Bdellastasin
Chain: B
Engineered: Yes

Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: S78
Expression_system_vector: Pvt102ualpha
symmetry Space Group: P 41 21 2
R_factor 0.191 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.020 70.020 119.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NA enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1C9P, 1TFX, 2TRM
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • serine-type endopeptidase in...


  • Primary referenceL-Isoaspartate 115 of porcine beta-trypsin promotes crystallization of its complex with bdellastasin., Rester U, Moser M, Huber R, Bode W, Acta Crystallogr D Biol Crystallogr 2000 May;56 ( Pt 5):581-8. PMID:10771427
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1eja.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1EJA
  • CSU: Contacts of Structural Units for 1EJA
  • Likely Quarternary Molecular Structure file(s) for 1EJA
  • Structure Factors (65 Kb)
  • Retrieve 1EJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EJA from S2C, [Save to disk]
  • Re-refined 1eja structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EJA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EJA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ejaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ejab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1eja] [1eja_B] [1eja_A]
  • SWISS-PROT database: [P82107] [P00761]
  • Domain organization of [BDEL_HIRME] [TRYP_PIG] by SWISSPFAM
  • Domain found in 1EJA: [Tryp_SPc ] by SMART
  • Other resources with information on 1EJA
  • Community annotation for 1EJA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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