1F3E	Transferase	date	Jun 02, 2000
title	A New Target For Shigellosis: Rational Design And Crystallog Studies Of Inhibitors Of Trna-Guanine Transglycosylase
authors	U.Graedler, H.D.Gerber, D.M.Goodenough-Lashua, G.A.G.Garcia, R. K.Reuter, M.T.Stubbs, G.Klebe
compound		source
Molecule: Queuine Trna-Ribosyltransferase Chain: A Synonym: Trna-Guanine Transglycosylase Ec: 2.4.2.29 Engineered: Yes		Organism_scientific: Zymomonas Mobilis Organism_taxid: 542 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet9d
symmetry	Space Group: C 1 2 1	R_factor 0.195 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.670 64.940 71.050 90.00 96.61 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	DPZ, ZN	enzyme	Transferase E.C.2.4.2.29 BRENDA
related structures	by homologous chain: 1P0D, 1PUD
Gene Ontology	Chain Function Process Component A
Primary reference	A new target for shigellosis: rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase., Gradler U, Gerber HD, Goodenough-Lashua DM, Garcia GA, Ficner R, Reuter K, Stubbs MT, Klebe G, J Mol Biol 2001 Feb 23;306(3):455-67. PMID:11178905

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk] Biological Unit Coordinates (1f3e.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 1F3E CSU: Contacts of Structural Units for 1F3E Likely Quarternary Molecular Structure file(s) for 1F3E Structure Factors (248 Kb) Retrieve 1F3E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F3E from S2C, [Save to disk] Re-refined 1f3e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F3E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F3E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F3E, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f3ea_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f3e_A] [1f3e] SWISS-PROT database: [P28720] Domain organization of [TGT_ZYMMO] by SWISSPFAM

Other resources with information on 1F3E

Community annotation for 1F3E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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