1F3W	Transferase	date	Jun 06, 2000
title	Recombinant Rabbit Muscle Pyruvate Kinase
authors	J.O.Wooll, R.H.E.Friesen, M.A.White, S.J.Watowich, R.O.Fox, J.C.L E.W.Czerwinski
compound		source
Molecule: Pyruvate Kinase Chain: A, B, C, D, E, F, G, H Ec: 2.7.1.40 Engineered: Yes		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Muscle Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm105 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prmpk
symmetry	Space Group: P 1	R_factor 0.238 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.000 105.400 143.500 95.90 92.80 111.90
method	X-Ray Diffraction	resolution	3.00 Å
ligand	K, MN, PYR	enzyme	Transferase E.C.2.7.1.40 BRENDA
related structures	by homologous chain: 1PKN
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase., Wooll JO, Friesen RH, White MA, Watowich SJ, Fox RO, Lee JC, Czerwinski EW, J Mol Biol 2001 Sep 21;312(3):525-40. PMID:11563914

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk] Biological Unit Coordinates (1f3w.pdb1.gz) 315 Kb Biological Unit Coordinates (1f3w.pdb2.gz) 317 Kb LPC: Ligand-Protein Contacts for 1F3W CSU: Contacts of Structural Units for 1F3W Likely Quarternary Molecular Structure file(s) for 1F3W Retrieve 1F3W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F3W from S2C, [Save to disk]

View 1F3W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F3W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F3W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f3wa1, region A:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wa2, region A:12-115,A:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wa3, region A:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wb1, region B:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wb2, region B:12-115,B:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wb3, region B:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wc1, region C:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wc2, region C:12-115,C:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wc3, region C:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wd1, region D:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wd2, region D:12-115,D:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wd3, region D:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3we1, region E:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3we2, region E:12-115,E:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3we3, region E:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wf1, region F:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wf2, region F:12-115,F:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wf3, region F:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wg1, region G:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wg2, region G:12-115,G:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wg3, region G:396-530 [Jmol] [rasmolscript] [script source]     - Domain d1f3wh1, region H:116-217 [Jmol] [rasmolscript] [script source]     - Domain d1f3wh2, region H:12-115,H:218-395 [Jmol] [rasmolscript] [script source]     - Domain d1f3wh3, region H:396-530 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f3w_D] [1f3w_C] [1f3w] [1f3w_E] [1f3w_H] [1f3w_F] [1f3w_G] [1f3w_B] [1f3w_A] SWISS-PROT database: [P11974] Domain organization of [KPYM_RABIT] by SWISSPFAM

Other resources with information on 1F3W

Community annotation for 1F3W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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