1F60	Translation	date	Jun 19, 2000
title	Crystal Structure Of The Yeast Elongation Factor Complex Eef
authors	G.R.Andersen, L.Pedersen, L.Valente, T.G.Kinzy, J.Nyborg
compound		source
Molecule: Elongation Factor Eef1a Chain: A Fragment: Eef1a		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
Molecule: Elongation Factor Eef1ba Chain: B Fragment: Eef1ba, Catalytical C-Terminal Domain Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet11d
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.850 91.810 92.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.67 Å
note	1F60 is a representative structure
related structures	by homologous chain: 1G7C
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha., Andersen GR, Pedersen L, Valente L, Chatterjee I, Kinzy TG, Kjeldgaard M, Nyborg J, Mol Cell 2000 Nov;6(5):1261-6. PMID:11106763

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (1f60.pdb1.gz) 94 Kb CSU: Contacts of Structural Units for 1F60 Likely Quarternary Molecular Structure file(s) for 1F60 Structure Factors (463 Kb) Retrieve 1F60 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F60 from S2C, [Save to disk] Re-refined 1f60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F60 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F60

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F60, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f60a3, region A:2-240 [Jmol] [rasmolscript] [script source]     - Domain d1f60a1, region A:241-334 [Jmol] [rasmolscript] [script source]     - Domain d1f60a2, region A:335-441 [Jmol] [rasmolscript] [script source]     - Domain d1f60b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f60_A] [1f60_B] [1f60] SWISS-PROT database: [P02994] [P32471] Domain organization of [EF1A_YEAST] [EF1B_YEAST] by SWISSPFAM Domain found in 1F60: [EF1_GNE ] by SMART

Other resources with information on 1F60

Community annotation for 1F60 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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