1FO0	Immune System	date	Aug 24, 2000
title	Murine Alloreactive Scfv Tcr-Peptide-Mhc Class I Molecule Co
authors	J.B.Reiser, C.Darnault, A.Guimezanes, C.Gregoire, T.Mosser, A.M. Verhulst, J.C.Fontecilla-Camps, B.Malissen, D.Housset, G.Mazza
compound		source
Molecule: Protein (Allogeneic H-2kb Mhc Class I Molecule) Chain: H Fragment: Extracellular Domains (Alpha1, Alpha2, Alpha3) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein (Beta-2 Microglobulin) Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Naturally Processed Octapeptide Pbm1 Chain: P Engineered: Yes		Synthetic: Yes Other_details: Sequence Naturally Occurs In Mus Muculus
Molecule: Protein (Bm3.3 T Cell Receptor Alpha-Chain) Chain: A Fragment: Fv Fragment, Variable Domain Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Expression_system_cell: Myeloma Cells
Molecule: Protein (Bm3.3 T Cell Receptor Beta-Chain) Chain: B Fragment: Fv Fragment, Variable Domain Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Expression_system_cell: Myeloma Cells
symmetry	Space Group: P 21 21 2	R_factor 0.225 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.580 120.420 102.850 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
note	1FO0 is a representative structure
related structures	by homologous chain: 1A9E, 1KB5, 1MI5, 1MRC, 1NAM
Gene Ontology	Chain Function Process Component B L
Primary reference	Crystal structure of a T cell receptor bound to an allogeneic MHC molecule., Reiser JB, Darnault C, Guimezanes A, Gregoire C, Mosser T, Schmitt-Verhulst AM, Fontecilla-Camps JC, Malissen B, Housset D, Mazza G, Nat Immunol 2000 Oct;1(4):291-7. PMID:11017099

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (1fo0.pdb1.gz) 105 Kb CSU: Contacts of Structural Units for 1FO0 Likely Quarternary Molecular Structure file(s) for 1FO0 Structure Factors (600 Kb) Retrieve 1FO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FO0 from S2C, [Save to disk] Re-refined 1fo0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FO0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FO0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fo0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fo0b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1fo0h2, region H:0-181 [Jmol] [rasmolscript] [script source]     - Domain d1fo0h1, region H:182-275 [Jmol] [rasmolscript] [script source]     - Domain d1fo0l_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fo0_H] [1fo0_P] [1fo0_B] [1fo0_L] [1fo0_A] [1fo0] SWISS-PROT database: [P01887] [P01901] [P04214] Domain organization of [B2MG_MOUSE] [HA1B_MOUSE] [TVB6_MOUSE] by SWISSPFAM Domains found in 1FO0: [IG] [IGc1 ] by SMART

Other resources with information on 1FO0

Community annotation for 1FO0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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