1FPP	Prenyltransferase	date	Jul 10, 1998
title	Protein Farnesyltransferase Complex With Farnesyl Diphosphate
authors	P.Dunten, U.Kammlott, R.Crowther, D.Weber, R.Palermo, J.Birktoft
compound		source
Molecule: Protein Farnesyltransferase Chain: B Synonym: Ftase Ec: 2.5.1.- Engineered: Yes Other_details: Purified Recombinant Ftase Was Treated With Protease Gluc Prior To Crystallization;		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fnta, Fntb Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five (Invitrogen) Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1393 Other_details: Viral Expression Constructs Were Provided By M. S. Brown And J. L. Goldstein (Southwestern Medical Center, Dallas, Tx);
Molecule: Protein Farnesyltransferase Chain: A Synonym: Ftase Ec: 2.5.1.- Engineered: Yes Other_details: Purified Recombinant Ftase Was Treated With Protease Gluc Prior To Crystallization		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Fnta, Fntb Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five (Invitrogen) Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1393 Other_details: Viral Expression Constructs Were Provided By M. S. Brown And J. L. Goldstein (Southwestern Medical Center, Dallas, Tx)
symmetry	Space Group: P 61	R_factor 0.230 R_Free 0.300
crystal cell	length a length b length c angle alpha angle beta angle gamma 170.000 170.000 68.860 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	FPP, PO4, ZN	enzyme	Transferase E.C.2.5.1 BRENDA
related structures	by homologous chain: 1D8E, 1N4R, 1NL4
Gene Ontology	Chain Function Process Component A acetylcholine receptor regul... B
Primary reference	Protein farnesyltransferase: structure and implications for substrate binding., Dunten P, Kammlott U, Crowther R, Weber D, Palermo R, Birktoft J, Biochemistry. 1998 Jun 2;37(22):7907-12. PMID:9609683

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk] Biological Unit Coordinates (1fpp.pdb1.gz) 119 Kb LPC: Ligand-Protein Contacts for 1FPP CSU: Contacts of Structural Units for 1FPP Likely Quarternary Molecular Structure file(s) for 1FPP Retrieve 1FPP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FPP from S2C, [Save to disk]

View 1FPP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FPP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FPP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fppa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fppb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fpp] [1fpp_B] [1fpp_A] SWISS-PROT database: [Q04631] [Q02293] Domain organization of [FNTA_RAT] [FNTB_RAT] by SWISSPFAM

Other resources with information on 1FPP

Community annotation for 1FPP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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