1FVE	Immunoglobulin	date	Oct 20, 1992
title	X-Ray Structures Of The Antigen-Binding Domains From Three V Humanized Anti-P185-Her2 Antibody 4d5 And Comparison With M Modeling
authors	C.Eigenbrot, M.Randal, L.Presta, A.A.Kossiakoff
compound		source
Molecule: Igg1-Kappa 4d5 Fab (Light Chain) Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Igg1-Kappa 4d5 Fab (Heavy Chain) Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.171 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.200 80.200 86.100 113.10 92.70 102.60
method	X-Ray Diffraction	resolution	2.70 Å
related structures	by homologous chain: 1AR1, 1DFB, 1FJ1, 1UWE
Primary reference	X-ray structures of the antigen-binding domains from three variants of humanized anti-p185HER2 antibody 4D5 and comparison with molecular modeling., Eigenbrot C, Randal M, Presta L, Carter P, Kossiakoff AA, J Mol Biol 1993 Feb 20;229(4):969-95. PMID:8095303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (1fve.pdb1.gz) 69 Kb Biological Unit Coordinates (1fve.pdb2.gz) 70 Kb CSU: Contacts of Structural Units for 1FVE Likely Quarternary Molecular Structure file(s) for 1FVE Structure Factors (97 Kb) Retrieve 1FVE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FVE from S2C, [Save to disk] Re-refined 1fve structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FVE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FVE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FVE, from MSDmotif at EBI Genome occurence of 1FVE's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fvea1, region A:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1fvea2, region A:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1fveb1, region B:1-120 [Jmol] [rasmolscript] [script source]     - Domain d1fveb2, region B:121-223 [Jmol] [rasmolscript] [script source]     - Domain d1fvec1, region C:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1fvec2, region C:108-214 [Jmol] [rasmolscript] [script source]     - Domain d1fved1, region D:1-120 [Jmol] [rasmolscript] [script source]     - Domain d1fved2, region D:121-223 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fve] [1fve_D] [1fve_B] [1fve_A] [1fve_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1FVE: [IG_like] [IGv ] by SMART

Other resources with information on 1FVE

Community annotation for 1FVE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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