1FZR Hydrolase date Oct 04, 2000
title Crystal Structure Of Bacteriophage T7 Endonuclease I
authors J.M.Hadden, M.A.Convery, A.C.Declais, D.M.J.Lilley, S.E.V.Philli
compound source
Molecule: Endonuclease I
Chain: A, B, C, D
Fragment: Residues 12-149
Synonym: Endodeoxyribonuclease I
Ec: 3.1.21.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage T7
Organism_taxid: 10760
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet19b
symmetry Space Group: P 21 21 2
R_factor 0.198 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.660 135.190 61.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.1.21.2 BRENDA
related structures by homologous chain: 1M0D, 1M0I
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceCrystal structure of the Holliday junction resolving enzyme T7 endonuclease I., Hadden JM, Convery MA, Declais AC, Lilley DM, Phillips SE, Nat Struct Biol 2001 Jan;8(1):62-7. PMID:11135673
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1fzr.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1fzr.pdb2.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1FZR
  • Likely Quarternary Molecular Structure file(s) for 1FZR
  • Structure Factors (684 Kb)
  • Retrieve 1FZR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FZR from S2C, [Save to disk]
  • Re-refined 1fzr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FZR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FZR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FZR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fzra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fzrb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fzrc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fzrd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fzr_C] [1fzr_B] [1fzr_D] [1fzr] [1fzr_A]
  • SWISS-PROT database: [P00641]
  • Domain organization of [ENRN_BPT7] by SWISSPFAM
  • Other resources with information on 1FZR
  • Community annotation for 1FZR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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