1G6X Hydrolase Inhibitor date Nov 08, 2000
title Ultra High Resolution Structure Of Bovine Pancreatic Trypsin (Bpti) Mutant With Altered Binding Loop Sequence
authors A.Addlagatta, H.Czapinska, S.Krzywda, J.Otlewski, M.Jaskolski
compound source
Molecule: Pancreatic Trypsin Inhibitor
Chain: A
Synonym: Bpti, Aprotinin, Trasylol, Basic Protease Inhibito
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paed4
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.891 51.891 43.035 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.86 Å
ligand EDO, SO4 enzyme
note 1G6X is a representative structure
related structures by homologous chain: 1K6U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUltrahigh-resolution structure of a BPTI mutant., Addlagatta A, Krzywda S, Czapinska H, Otlewski J, Jaskolski M, Acta Crystallogr D Biol Crystallogr 2001 May;57(Pt 5):649-63. PMID:11320305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1g6x.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (1g6x.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1G6X
  • CSU: Contacts of Structural Units for 1G6X
  • Likely Quarternary Molecular Structure file(s) for 1G6X
  • Structure Factors (670 Kb)
  • Retrieve 1G6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G6X from S2C, [Save to disk]
  • Re-refined 1g6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1G6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G6X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1G6X from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G6X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g6xa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g6x_A] [1g6x]
  • SWISS-PROT database: [P00974]
  • Domain organization of [BPT1_BOVIN] by SWISSPFAM
  • Domain found in 1G6X: [KU ] by SMART
  • Other resources with information on 1G6X
  • Community annotation for 1G6X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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