1G8M Transferase, Hydrolase date Nov 17, 2000
title Crystal Structure Of Avian Atic, A Bifunctional Transformyla Cyclohydrolase Enzyme In Purine Biosynthesis At 1.75 Ang. R
authors S.E.Greasley, P.Horton, G.P.Beardsley, S.J.Benkovic, I.A.Wilson
compound source
Molecule: Aicar Transformylase-Imp Cyclohydrolase
Chain: A, B
Fragment: Aminoimidazole Carboxamide Ribonucleotide Transfo Inosine Monophosphate Cyclohydrolase;
Synonym: Bifunctional Purine Biosynthesis Protein Purh [Inc Phosphoribosylaminoimidazolecarboxamide Formyltransferase ( Transformylase) And Imp Cyclohydrolase (Inosinicase, Imp Sy Atic)];
Ec: 2.1.2.3, 3.5.4.10
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Purh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 28a
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.100 106.000 103.500 90.00 108.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand G, K, MSE enzyme Transferase E.C.2.1.2.3 BRENDA
note 1G8M is a representative structure
related structures by homologous chain: 1THZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a bifunctional transformylase and cyclohydrolase enzyme in purine biosynthesis., Greasley SE, Horton P, Ramcharan J, Beardsley GP, Benkovic SJ, Wilson IA, Nat Struct Biol 2001 May;8(5):402-6. PMID:11323713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (1g8m.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 1G8M
  • CSU: Contacts of Structural Units for 1G8M
  • Likely Quarternary Molecular Structure file(s) for 1G8M
  • Retrieve 1G8M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G8M from S2C, [Save to disk]
  • View 1G8M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1G8M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G8M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g8ma2, region A:201-593 [Jmol] [rasmolscript] [script source]
        - Domain d1g8ma1, region A:4-200 [Jmol] [rasmolscript] [script source]
        - Domain d1g8mb2, region B:201-593 [Jmol] [rasmolscript] [script source]
        - Domain d1g8mb1, region B:4-200 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g8m] [1g8m_B] [1g8m_A]
  • SWISS-PROT database: [P31335]
  • Domain organization of [PUR9_CHICK] by SWISSPFAM
  • Domains found in 1G8M: [AICARFT_IMPCHas] [MGS ] by SMART
  • Other resources with information on 1G8M
  • Community annotation for 1G8M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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