1H1A Hydrolase date Jul 05, 2002
title Thermophilic Beta-1,4-Xylanase From Chaetomium Thermophilum
authors N.Hakulinen, J.Rouvinen
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A, B
Fragment: Catalytic Domain, Residues 27-217
Synonym: Endoxylanase 11a
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Chaetomium Thermophilum
Organism_taxid: 209285
Gene: Xyn11a
Expression_system: Trichoderma Reesei
Expression_system_taxid: 51453
symmetry Space Group: P 21 21 2
R_factor 0.179 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.240 57.150 65.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CA, GOL, PCA, SO4, UNX enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1REE, 1XND
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThree-dimensional structures of thermophilic beta-1,4-xylanases from Chaetomium thermophilum and Nonomuraea flexuosa. Comparison of twelve xylanases in relation to their thermal stability., Hakulinen N, Turunen O, Janis J, Leisola M, Rouvinen J, Eur J Biochem 2003 Apr;270(7):1399-412. PMID:12653995
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1h1a.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (1h1a.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1H1A
  • CSU: Contacts of Structural Units for 1H1A
  • Likely Quarternary Molecular Structure file(s) for 1H1A
  • Structure Factors (392 Kb)
  • Retrieve 1H1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H1A from S2C, [Save to disk]
  • Re-refined 1h1a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H1A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H1A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h1aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1h1ab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h1a] [1h1a_A] [1h1a_B]
  • SWISS-PROT database: [Q8J1V6]
  • Domain organization of [Q8J1V6_9PEZI] by SWISSPFAM
  • Other resources with information on 1H1A
  • Community annotation for 1H1A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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