1H83 Oxidoreductase date Jan 24, 2001
title Structure Of Polyamine Oxidase In Complex With 1,8-Diaminooc
authors C.Binda, A.Coda, R.Angelini, R.Federico, P.Ascenzi, A.Mattevi
compound source
Molecule: Polyamine Oxidase
Chain: A, B, C
Fragment: Fad-Binding Domain
Ec: 1.5.3.11
 Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
symmetry Space Group: P 65 2 2
R_factor 0.196 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.690 184.690 282.220 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand DIA, FAD, FCA, MAN, NAG BindingDB enzyme Oxidoreductase E.C.1.5.3.11 BRENDA
related structures by homologous chain: 1B5Q, 1H82
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural bases for inhibitor binding and catalysis in polyamine oxidase., Binda C, Angelini R, Federico R, Ascenzi P, Mattevi A, Biochemistry 2001 Mar 6;40(9):2766-76. PMID:11258887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1h83.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (1h83.pdb2.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1H83
  • CSU: Contacts of Structural Units for 1H83
  • Likely Quarternary Molecular Structure file(s) for 1H83
  • Retrieve 1H83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H83 from S2C, [Save to disk]
    • View 1H83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1H83
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H83, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h83a2, region A:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1h83a1, region A:5-293,A:406-463 [Jmol] [rasmolscript] [script source]
        - Domain d1h83b2, region B:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1h83b1, region B:5-293,B:406-466 [Jmol] [rasmolscript] [script source]
        - Domain d1h83c2, region C:294-405 [Jmol] [rasmolscript] [script source]
        - Domain d1h83c1, region C:5-293,C:406-466 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h83_C] [1h83_B] [1h83] [1h83_A]
  • SWISS-PROT database: [O64411]
  • Domain organization of [PAO_MAIZE] by SWISSPFAM
    • Other resources with information on 1H83
  • Community annotation for 1H83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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