1HG2 Endocytosis date Dec 12, 2000
title Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myelo Leukaemia Protein, Inositol(4,5)P2 Complex
authors M.G.J.Ford, P.R.Evans, H.T.Mcmahon
compound source
Molecule: Clathrin Assembly Protein Short Form
Chain: A
Fragment: N-Terminal Domain Residues 1-289
Synonym: Calm-N, Ap180-2
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t2
Expression_system_gene: Calm-N
symmetry Space Group: P 41 21 2
R_factor 0.197 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.859 77.859 122.333 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IP2 enzyme
related structures by homologous chain: 1HFA, 1HX8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSimultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes., Ford MG, Pearse BM, Higgins MK, Vallis Y, Owen DJ, Gibson A, Hopkins CR, Evans PR, McMahon HT, Science 2001 Feb 9;291(5506):1051-5. PMID:11161218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1hg2.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1HG2
  • CSU: Contacts of Structural Units for 1HG2
  • Likely Quarternary Molecular Structure file(s) for 1HG2
  • Structure Factors (191 Kb)
  • Retrieve 1HG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HG2 from S2C, [Save to disk]
  • Re-refined 1hg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HG2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HG2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hg2a1, region A:150-281 [Jmol] [rasmolscript] [script source]
        - Domain d1hg2a2, region A:19-149 [Jmol] [rasmolscript] [script source]
        - Domain d1f1hg2, region G:101-468 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hg2] [1hg2_A]
  • SWISS-PROT database: [O55012]
  • Domain organization of [PICA_RAT] by SWISSPFAM
  • Domain found in 1HG2: [ENTH ] by SMART
  • Other resources with information on 1HG2
  • Community annotation for 1HG2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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