1HOW Transferase date Dec 11, 2000
title The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase I
authors B.J.Nolen, C.Y.Yun, C.F.Wong, J.A.Mccammon, X.D.Fu, G.Ghosh
compound source
Molecule: Serinethreonine-Protein Kinase Ymr216c
Chain: A
Fragment: Sky1pdeltans
Ec: 2.7.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Ymr216c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.403 88.322 135.952 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand EDO, SO4 enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1Q8Y, 1Q99
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of Sky1p reveals a novel mechanism for constitutive activity., Nolen B, Yun CY, Wong CF, McCammon JA, Fu XD, Ghosh G, Nat Struct Biol 2001 Feb;8(2):176-83. PMID:11175909
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1how.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1HOW
  • CSU: Contacts of Structural Units for 1HOW
  • Likely Quarternary Molecular Structure file(s) for 1HOW
  • Retrieve 1HOW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HOW from S2C, [Save to disk]
  • View 1HOW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HOW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HOW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1howa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1how] [1how_A]
  • SWISS-PROT database: [Q03656]
  • Domain organization of [SKY1_YEAST] by SWISSPFAM
  • Domain found in 1HOW: [S_TKc ] by SMART
  • Other resources with information on 1HOW
  • Community annotation for 1HOW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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